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Hello, I would like to inquire about the input data format. When preparing the config.SFs file, I observed that it is possible to input non-chromosomal data. Consequently, I prepared two datasets.
Th…
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Hello,
I am getting the following error when running the function.
```
Assuming paired scATAC/scRNA-seq data ..
Matrix object input detectedCentering counts for cells sequentially in groups of …
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## Bug Report
### Affected tool(s) or class(es)
VariantRecalibrator
### Affected version(s)
- [X] Latest public release version [4.5.0.0]
- [ ] Latest master branch as of [date of test?]
#…
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Hi,In the reported paper "Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model", ``r_1912`` is the biomass production reaction in which the protein coefficient is the …
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Hello! Hope you are doing well. I would like to try out `manysketch` for different protein moltypes. I see that the new `gather`, `search`, `index` and `check` [commands](https://github.com/sourmash-b…
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## Problem
We are currently using a hinge function on the log scale for fecal shedding kinetics, which is based in part on nasal shedding kinetics and in part on data from fecal shedding studies. How…
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Following up on your previous question @biouserPD
To run sneep you need:
- the genome of your favourite organism in fast format
- a list of species specific TF binding motifs (PWMs) in TRANSFA…
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Hey Bernardo!
Random question. When you predict across the dm3 genome, how do you save the outputs and then convert them to bigWig tracks that nicely match the STARR-seq bigWigs in magnitude? Maybe…
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Hi all,
I have been experiencing a peculiar problem with my genome-scale reconstructions being unable to take up any substrates/metabolites or excrete any products/metabolites. I provide a mineral …
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Hello SnakeMake team. I think I might have identified an issue when trying to automate a workflow (and this is the first step).
**I was using version v8.11.3**
I am trying to start off using a p…