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### Description of the bug
I'm having some trouble getting the `test` data to run via `singularity` with `alevin`, specifically if I supply my own genome/annotation. It's failing at `SIMPLEAF_INDEX`
…
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I have been trying to use decoil installed from source but I am experiencing an Error. Example command:
```
for SAMPLE in 1 2 3 4
do
mkdir -p ${SAMPLE}T/logs
mkdir -p ${SAMPLE}T/tmp
export B…
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## Bug Report
### Affected tool(s) or class(es)
VariantRecalibrator
### Affected version(s)
- [X] Latest public release version [4.5.0.0]
- [ ] Latest master branch as of [date of test?]
#…
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I'm trying to sketch the [RVDB, the Reference Viral Genome Database](https://rvdb.dbi.udel.edu/). The clustered file is ~600 MB.
```
sourmash scripts manysketch C-RVDBvCurrent.manysketch.csv -o C-…
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MVP data:
[MVP](https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs002453.v1.p1) is an ongoing prospective cohort study and mega‐biobank in the Department of Veterans Affairs Heal…
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Hi, @hasindu2008
When I use f5c to eventalign RNA004 data, the system popped up this bug and crashed.
Here are a few screenshots.
Here is my code:
`for i in input; do`
`echo $i`
`mkdir -p…
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I'm very new to CNV analysis and run across something I don't understand. As stated in the manual for the scatter command there are two options:
![image](https://github.com/user-attachments/assets/55…
lvree updated
2 weeks ago
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Hi all,
I have been experiencing a peculiar problem with my genome-scale reconstructions being unable to take up any substrates/metabolites or excrete any products/metabolites. I provide a mineral …
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If we intend to continue using augment_maf to summarize/capture allele count information we should consider a way to allow it to be run in parallel. The problem is particularly worsened in FFPE genome…
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I could also produce a nice heatmap automatically from the resulting POCP TSV.
Here is some example code:
```bash
mamba create -n py-pocp seaborn matplotlib pandas
```
```python
import pa…