CDCgov wastewater-informed-covid-forecasting issues

CDCgov / wastewater-informed-covid-forecasting

Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub

https://cdcgov.github.io/wastewater-informed-covid-forecasting/

Apache License 2.0

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issues

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Point workflows at action endpoints, remove custom/vendored actions

#95 dylanhmorris closed 3 days ago
0
Replace vendored github actions

#94 dylanhmorris closed 3 days ago
0
updates to codebase to reflect recent dev

#93 kaitejohnson closed 4 days ago
0
Check packages against `goodpractice`

#92 damonbayer opened 6 days ago
1
Add Damon to author list

#91 damonbayer closed 6 days ago
1
update gitignore to exclude batch files for now

#90 kaitejohnson closed 6 days ago
0
WIP exp gamma implementation

#89 kaitejohnson opened 6 days ago
0
NCP gamma sum approximation 2nd pass

#88 kaitejohnson opened 6 days ago
0
Implementation of NCP with normal approximation to iid sum of gammas

#87 kaitejohnson opened 6 days ago
0
Episewer take 3

#86 kaitejohnson closed 6 days ago
0
Rerun evaluation model runs

#85 kaitejohnson opened 6 days ago
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Make first draft of evaluation manuscript figures

#84 kaitejohnson opened 6 days ago
0
Create initial model package repo in cdcgov

#83 kaitejohnson opened 6 days ago
0
Map out initial ideas for implementing spatial correlation in model

#82 kaitejohnson opened 6 days ago
0
Get vignette on current wastewater model running

#81 kaitejohnson opened 6 days ago
0
Use individual level shedding data to estimate G, phi, + hinge function parameters

#80 kaitejohnson opened 6 days ago
1
Implement MVN to estimate a site-site covariance matrix

#79 kaitejohnson opened 6 days ago
5
Estimate the effective susceptible population

#78 kaitejohnson opened 6 days ago
0
Separate site and lab level observation error

#77 kaitejohnson opened 6 days ago
0
Mixture model to handle outliers within model

#76 kaitejohnson opened 6 days ago
0
Write tests for transformation/operations in stan

#75 kaitejohnson opened 6 days ago
0
Use native pipes throughout

#74 kaitejohnson opened 6 days ago
0
Model definition: add diagrams

#73 kaitejohnson opened 6 days ago
0
Generation interval test

#72 kaitejohnson opened 6 days ago
0
Literal zero negative binomial mean

#71 kaitejohnson opened 6 days ago
0
Incorporate `pak` into standard installation workflow

#70 kaitejohnson opened 6 days ago
0
Tweak handling of shedding distribution in code

#69 kaitejohnson opened 6 days ago
0
Validation of forecast submissions prior to submitting to forecast hub

#68 kaitejohnson opened 6 days ago
0
Add a limitations section to the model definition

#67 kaitejohnson opened 6 days ago
0
Configuration should be data, not code

#66 kaitejohnson opened 6 days ago
0
Flag submitted runs in archive

#65 kaitejohnson opened 6 days ago
0
Rename arguments to model fitting functions for clarity

#64 kaitejohnson opened 6 days ago
0
EDA to determine temporal granularity on which the observation stdev should vary in time

#63 kaitejohnson opened 6 days ago
0
Check for low ESS on a chain-by-chain basis

#62 kaitejohnson opened 6 days ago
0
Implement time-varying observation error stdev

#61 kaitejohnson opened 6 days ago
0
Clean up duplication of filepaths to output

#60 kaitejohnson opened 6 days ago
0
Remove use of `here::here`

#59 kaitejohnson opened 6 days ago
0
Decide whether to track archived config files in git for production pipeline

#58 kaitejohnson opened 1 week ago
0
Fix nomenclature for predicted observations

#57 kaitejohnson opened 1 week ago
0
Add documentation to a number of components in the production pipeline package

#56 kaitejohnson opened 1 week ago
0
Add documentation to a number of components in modeling package

#55 kaitejohnson opened 1 week ago
0
Use stan AR(1) in fake data simulation

#54 kaitejohnson opened 1 week ago
0
Format `toy_data_vignette` as an R package vignette

#53 kaitejohnson opened 1 week ago
0
roxygenize in pre-commit

#52 kaitejohnson opened 1 week ago
0
Mechanistic handling of observation error in ww scaling with contributing infections

#51 kaitejohnson opened 1 week ago
0
Start AR(1) on first differences at stationarity

#50 kaitejohnson opened 1 week ago
0
More robust determination of what vintages of wastewater data are available

#49 kaitejohnson opened 1 week ago
0
Identify functions in wweval that should have examples and don't currently

#48 kaitejohnson opened 1 week ago
0
Unit tests for `wweval` plot functions

#47 kaitejohnson opened 1 week ago
0
Speed up container build time

#46 kaitejohnson opened 1 week ago
0