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wastewater-informed-covid-forecasting
Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
https://cdcgov.github.io/wastewater-informed-covid-forecasting/
Apache License 2.0
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add Containerfile and .ContainerBuilRprofile
#162
kaitejohnson
closed
2 months ago
0
Additional manuscript analysis
#161
kaitejohnson
closed
1 month ago
0
Light replacements of cfaforecastrenewalww with wweval and wwinference funs
#160
gvegayon
closed
2 months ago
2
158 resolve postprocess failures
#159
kaitejohnson
closed
2 months ago
0
Fix failed post-process runs
#158
kaitejohnson
closed
2 months ago
1
Expand R versions in `wweval`
#157
kaitejohnson
closed
2 months ago
0
update R version and CI for `cfaforecastrenewalww`
#156
kaitejohnson
closed
2 months ago
0
Consider using `geom_lineribbon` and `step="mid"` for quantile-based figures
#155
damonbayer
opened
2 months ago
0
Expanding compatible R versions
#154
hannahcohen4
closed
2 months ago
1
Update README.md for renv
#153
hannahcohen4
closed
2 months ago
0
Save vector figures for manuscript
#152
damonbayer
closed
1 month ago
0
150: Make wastewater metadata and summary stats
#151
kaitejohnson
closed
2 months ago
1
Generate a table of wastewater metadata
#150
kaitejohnson
closed
2 months ago
0
forgot to update one parameter name
#149
kaitejohnson
closed
2 months ago
0
Fix hierarchical stdev bug
#148
kaitejohnson
closed
2 months ago
0
Scope out necessary steps to use `wwinference` package in eval Azure pipeline
#147
kaitejohnson
closed
1 month ago
1
Restore pre-commit `deps-in-desc` when package != repo
#146
kaitejohnson
opened
2 months ago
0
Duplicate error in hierarchical sd
#145
kaitejohnson
closed
2 months ago
0
Pre-commit doesn't appear to be running
#144
kaitejohnson
closed
2 months ago
0
Manual ww data exclusion
#143
kaitejohnson
closed
2 months ago
2
Fix bug in hierarchical sd
#142
kaitejohnson
closed
2 months ago
1
Fix pre-commit
#141
kaitejohnson
closed
2 months ago
6
Filter to only log scores
#140
kaitejohnson
closed
3 months ago
1
Scoring was failing because of required column names
#139
kaitejohnson
closed
3 months ago
1
Hot fix flags and targets
#138
kaitejohnson
closed
3 months ago
1
Remove dependency on `pcr_target_flowpop_lin`
#137
kaitejohnson
closed
3 months ago
0
fix back calculation in R(t)
#136
kaitejohnson
closed
3 months ago
1
Update infection to admissions delay distribution
#135
kaitejohnson
opened
3 months ago
0
fixed project-wide color palette for epidemic phases
#134
dylanhmorris
opened
3 months ago
0
Add to targets pipeline generation of a pdf with input hospital data for each location and forecast date
#133
kaitejohnson
opened
3 months ago
0
Create a separate function for computing the relative CRPS
#132
kaitejohnson
closed
3 months ago
4
Make a `compute_relative_crps()` function
#131
kaitejohnson
closed
3 months ago
1
Make pdfs of input hospital admissions data by state
#130
kaitejohnson
opened
3 months ago
0
Add state-level R(t) to distribution to postprocessed outputs
#129
kaitejohnson
opened
3 months ago
0
Alternate epidemic phase analysis based on P(actual phase | we predicted phase)
#128
kaitejohnson
opened
3 months ago
1
Fix epidemic phase analysis
#127
kaitejohnson
closed
3 months ago
0
add check for presence of column
#126
kaitejohnson
closed
3 months ago
0
Fix the epidemic phase analysis to be based on the phase the forecast date is in
#125
kaitejohnson
closed
3 months ago
0
120 refactor to generate flags in postprocess
#124
kaitejohnson
closed
3 months ago
3
Move ordering functions to separate file
#123
kaitejohnson
closed
3 months ago
0
Use `scoringutils::transform_forecasts()` instead of manual transform
#122
kaitejohnson
closed
3 months ago
0
Move ordering functions to their own file and checks for column existence
#121
kaitejohnson
closed
3 months ago
3
Streamline azure postprocess and combination of ww data in `_targets_eval_postprocessing.R`
#120
kaitejohnson
closed
3 months ago
0
add other models from covidhub, remove those that are incomplete
#119
kaitejohnson
closed
2 months ago
4
Convert table of exclusions to the one needed for our workflow
#118
kaitejohnson
closed
4 months ago
1
Add targets to save a pdf of the wastewater data by state
#117
kaitejohnson
closed
4 months ago
0
Visual inspection of wastewater data across the season
#116
kaitejohnson
closed
4 months ago
0
Add hospital data exclusions to pre-processing pipeline rerun
#115
kaitejohnson
opened
4 months ago
0
Add all models that submitted to the forecast hub each week to hub comparison analysis
#114
kaitejohnson
closed
2 months ago
0
Use `scoringutils::transform_forecasts()` instead of writing own
#113
kaitejohnson
closed
3 months ago
0
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