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wastewater-informed-covid-forecasting
Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
https://cdcgov.github.io/wastewater-informed-covid-forecasting/
Apache License 2.0
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Issue 211: Add real-time hosp only model to analysis
#212
kaitejohnson
opened
15 hours ago
0
Add hosp only to the real-time analysis in Hub comparison figure
#211
kaitejohnson
opened
17 hours ago
0
Issue 209: Compute the relative scores in real-time
#210
kaitejohnson
closed
1 day ago
1
Get the real-time relative CRPS scores between ww and hosp model
#209
kaitejohnson
opened
5 days ago
0
Issue 207: test time varying offset
#208
kaitejohnson
closed
2 days ago
0
Test out a time varying offset
#207
kaitejohnson
opened
2 weeks ago
0
Issue 205: Test a larger R(t) RW step size stdev ( `eta_sd_sd` ) for `wwinference` package default
#206
kaitejohnson
closed
2 days ago
0
Test out a less informative RW step size for `wwinference` update
#205
kaitejohnson
opened
3 weeks ago
0
203 update scoringutils 2.0.0
#204
kaitejohnson
closed
2 weeks ago
1
Use new `scoringutils 2.0.0` in pipeline
#203
kaitejohnson
opened
3 weeks ago
0
Final manuscript analyses and edits in `targets` pipeline
#202
kaitejohnson
opened
3 weeks ago
0
Rename plotting colors function
#201
kaitejohnson
opened
3 weeks ago
0
Time varying offset eval
#200
kaitejohnson
closed
2 weeks ago
0
Modify eta mean
#199
kaitejohnson
closed
3 weeks ago
0
Modify eta and inf feedback
#198
kaitejohnson
closed
3 weeks ago
1
196 fit inf feedback longer time series
#197
kaitejohnson
closed
3 weeks ago
0
Fit to a longer time series to estimate infection feedback
#196
kaitejohnson
closed
2 weeks ago
0
Issue 194: plot benchmarks
#195
kaitejohnson
closed
3 weeks ago
1
Add a plot/ table summarizing changes in benchmarking performance
#194
kaitejohnson
closed
3 weeks ago
1
188 inf feedback inf red
#193
kaitejohnson
closed
3 weeks ago
0
188 bench inf feedback int adjust
#192
kaitejohnson
closed
3 weeks ago
0
adjust R(t) priors, keep inf feedback diffuse
#191
kaitejohnson
closed
3 weeks ago
3
Hot fix add csvs
#190
kaitejohnson
closed
1 month ago
0
Issue 188: Benchmark infection feedback performance
#189
kaitejohnson
closed
3 weeks ago
5
Test out modifying infection feedback prior
#188
kaitejohnson
closed
2 weeks ago
0
Issue 186: Set up preliminary benchmarking
#187
kaitejohnson
closed
1 month ago
2
Set up performance benchmarking
#186
kaitejohnson
closed
1 month ago
2
Issue 184: Fix plots so data below LOD is at LOD
#185
kaitejohnson
closed
3 weeks ago
2
Set data to the LOD when data is below the LOD
#184
kaitejohnson
closed
3 weeks ago
0
Hot fix plot
#183
kaitejohnson
closed
1 month ago
0
Remove dependency on `cfaforecastrenewalww` and use `wwinference`
#182
kaitejohnson
closed
1 month ago
0
Fix pipeline for targets
#181
kaitejohnson
closed
1 month ago
0
Remove extra functions that aren't documented
#180
kaitejohnson
closed
1 month ago
0
Add real-time exclusions to eval pipeline exclusions
#179
kaitejohnson
closed
1 month ago
1
Discuss how to handle 0s in concentrations in pre-processing
#178
kaitejohnson
opened
1 month ago
0
176 use wwinference draws
#177
kaitejohnson
closed
1 month ago
2
Use `wwinference::draws()` to get the draws joined with data instead of `wweval::get_draws_w_data()` in `lesscfaforecastrenewalww`
#176
kaitejohnson
closed
2 weeks ago
0
Delete unnecessary pre-processing functions in `wweval` within `lesscfaforecastrenewalww` branch
#175
kaitejohnson
opened
1 month ago
0
update pipeline repo readme
#174
kaitejohnson
closed
1 month ago
0
Exclude wastewater forecast-date-locs in retro that we excluded in real-time from Feb-Mar
#173
kaitejohnson
opened
1 month ago
0
Use pre-processing from `wwinference` not `wweval`
#172
kaitejohnson
closed
1 month ago
1
Merging prod to the less-cfaforecastrenewal branch
#171
gvegayon
closed
2 months ago
0
Add example data to run scratch scripts for exponential growth rate analysis
#170
kaitejohnson
opened
2 months ago
2
Add an analysis of the growth rates in hospital admissions and ww data with lags
#169
kaitejohnson
opened
2 months ago
5
Make a plot of scores over time with forecast comparisons overlaid
#168
kaitejohnson
opened
2 months ago
0
165 growth rate comparisons
#167
kaitejohnson
closed
2 months ago
2
165 make post process plots
#166
kaitejohnson
closed
2 months ago
0
Add plots of fits compared to calibration and evaluation data in `eval_post_process` for every location-forecast date
#165
kaitejohnson
closed
1 month ago
0
Removing cfaforecastrenewalww package dependency in favor of wwinference
#164
gvegayon
closed
1 month ago
1
Second batch replacing cfaforecastrenewalww
#163
gvegayon
closed
1 month ago
4
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