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First off, thank you very much for providing this tool as an open-source solution.
I am a radiologist and must admit that i have little programming knowledge regarding python. Thats why i am strugge…
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For some studies, the total number of cases in the cancer summary plot does not match the total number for the cancer type in study view.
We can reproduce the error by:
1. Go to the [CCLE Broad…
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New term request Immunohistochemistry abnormal for MLH1, MSH2, MSH6, and/or PMS2 in tumor tissue (IHC) (elthat_110918164403):
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Hi @diazlab and @soerenmueller
I want to predict tumor cells in Suva’s 2014 IDH wt Glioma dataset, for which I only have log2tpm values. How can we convert log2tpm to log2cpm or is there a way to us…
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When executing the function:
```
cells.df = auto_cna_signal(
'SAMPLES/sampleA',
'genes.tsv',
prefix = 'example',
cell_cycle = 'cc_genes.tsv',
use_cache = FALSE
)
```
using the file…
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**RDAS API Issues and Improvements:**
-There are inconsistencies between the results displayed by the RDAS API and those obtained from PubMed and ClinicalTrials.gov. Examples include Glioblastoma (GB…
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https://pubmed.ncbi.nlm.nih.gov/20129251/
Please keep this checklist for curation of a new study.
- [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before cura…
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Thank you very much for developing this package!
I'm relatively new to the coding world and was wondering if you could advise me on the follow issue. I started working through your workflow with on…
SITRR updated
12 months ago
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I want to use the script for MeDeCom with my own 76 samples. Up to the removal of the confounder by means of ICA everything worked without problems. I worked with DecompPipeline 1.0.3 and MeDeCom 1.0.…
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**Describe the bug**
Uploading my own T1-CE .nii and performing pre-operative segmentation yields an error "No radiological volume for {'timestamp': 0, 'sequence': 'T1-CE', 'labels': None, 'space': {…