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Hello,
I am trying to use monocle3 to run a trajectory analysis on a subset of cells from an integrated Seurat object and I am getting the following error:
```
> cds_Seurat
pyjm updated
7 months ago
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Hello,
Thanks a lot for this wonderful mapper. I have been impressed by it so far.
Is there a way to automatically identify clusters of closely connected nodes within the TDA graph?
I have s…
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Hi @DaneseAnna ,
now the rank_feature_groups_matrixplot is working however i don't quite understand the process of feature groups being grouped together.
Because most likely this:
`epi.pl.rank_…
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Thanks so much for the monocle3.
When I'm trying install the monocle3 `py_install("louvain")`, the error is
> Solving environment: ...working... failed
> PackagesNotFoundError: The following p…
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Hi, I found that for my dataset, if I use runDESC via scIB, I will receive such error:
![image](https://user-images.githubusercontent.com/43333475/161404871-82df2d2d-e8b6-435b-9ed3-cfb6928b9da7.png)
…
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Hi,
I interested in running CRANE for a network analysis. I been trying the implementation in the NetZooR package.
In the paper it's mentioned that CRANE can be used with other methods outside of…
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When compute deltaQ in `q` method ,` deltaQ = k_i_in - (k_i * sigma_tot / M)` seems not right. Here M is degree of Graph(2* edge, here may be total edge weight*2). According the paper,we can use rela…
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (option…
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Hello @anvaka,
I'm trying to install your module but I have an exception; this is the stacktrace:
```
/home/vincenzo/.cache/node-gyp/8.10.0/include/node/v8.h: In instantiation of ‘void v8::Pers…
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Hi all, I am having an issue with installing this package on my Mac OS X. I am using an anaconda environment with python 3.6, so I am using the 'git clone' followed by 'python setup.py build and insta…