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Thank you for your contribution. Regarding the c-index value of the experiment, it does not reach the result in your paper.Use resnet 50, x20, 256×256patches in CLAM for feature extraction. Multimodal…
H-Q-N updated
2 months ago
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Hi,
Thank you for this incredible work.
Does the heatmap visualization code always visualize the heatmap of the first class?
Concretely, after computing the attention scores A with the shape of (…
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Hi,
I'm running into the following error when trying to run create_splits_seq.py in a conda environment with CONCH and CLAM installed:
python create_splits_seq.py --task task_2_tumor_subtyping --s…
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Hi authors!
Thanks for your brilliant work! I also want to know where we can find the meta data of cells like **cell type** in HEST?
Thanks! I am looking forward to your reply.
Best,
We…
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Hi，how do I know if the Whole Slide Images (WSIs) I am using are at 20× magnification?
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Hi all,
Thanks for providing this resource. Is there a way to match CellViT's cell type labels, obtained from the images, with the gene expression vectors in the AnnData object?
Merel
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Your work is great！ I am a novice in pathological image survival analysis, so I would like to know how the clinical information are collected correctly?
The information in [cbioportal](https://www.…
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Hi,
is there a set of ready-to-use segmentation parameters available that successfully segments WSIs with a partially black background? Right now the mask is right at the border between black and …
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Hello, could you please provide a corresponding dataset_csv file? The file in the project is damaged. Thank you very much.
H-Q-N updated
5 months ago
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您好，
最近在复现您的文章的过程中遇到了一些问题，想咨询一下，
1. 参考您论文中使用20x的分辨率对LUAD数据集进行实验。首先使用CLAM，在分patch的时候（create_patches_fp），用level 0，patch大小为512*512，然后再特征提取的过程中（extract_features_fp，使用custom_downsample 2 ），将图片resize到…