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Hello,
I am the developer of MaSuRCA assembler. I am looking for a good long-read scaffolder and your paper had nice results. However, when I tried using your scaffolder on a human genome assembl…
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Hi, I'm having trouble to compile the code checked out yesterday. Below are the command I issued at a terminal (CentOS7):
git clone https://github.com/alekseyzimin/masurca.git
cd masurca/
git sub…
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I'm trying to compare runs of two assemblies, a short read only and a short read + pacbio. I've run the simple one-liner commands specified in the tutorial (i.e. not using the config file) and both th…
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I have assembled a bacterial genome from Nanopore long reads using Flye and would like to use polca to polish them using the Illumina paired short reads. I have installed Masurca by cloning from githu…
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Hi,
I was using masurca to assemble a genome. Unfortunately, I got an error which I cannot fix, can you please help to fix it.
cat: write error: Broken pipe
mkdir: cannot create directory `CA/f…
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Dear Masurca team,
I'm trying to assemble a yeast genome (roughly 13MB genome) with Illumina PE reads and everything seems to work fine until the Gap close step:
[jue jul 25 15:45:38 CEST 2019] …
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#### Velvet
```
velveth ASS 63,93,2 -shortPaired -fastq -separate read1.fq read2.fq -long -fasta long.fa
velvet99/velvetg ASS_63 >&ASS_63.log;
```
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Hi,
Sorry for posting so many issues.
I am running MaSuRCA 3.2.6 and I get the below error.
[Fri Aug 31 14:49:21 AEST 2018] Processing pe library reads
[Fri Aug 31 14:49:21 AEST 2018] Proces…
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I download all ftp files from article"Test Illumina+Pacbio data set for MaSuRCA" in"MaSuRCA genome assembly package" website. After run the assemble.sh I got these error
[rom1025tyc@clogin4 yeast]$…
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Hi,
I noticed that when you restart during the CABOG assembly stage the CA.mr.* directory is removed and recreated (this appears to be happening in the mega_reads_assemble_cluster.sh script). After…