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I attempted to create an alignment from a seed of six sequences from four species (this is my input csv file):
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species,name,aliases,sequence,accession
Homo sapiens,TTHY_…
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I am wondering if it is possible to insert a new sequence into an existing phylogenetic tree.
For instance, I have an existing tree with 500 nodes. Now I have 4 more sequences. It seems very ineff…
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Thanks for this tool! I really like the presentation and I hope we can make it as accurate as possible.
To that end, I'd like to propose an "Expected Maximum" column similar to the current "Guarant…
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1. Most of JN.1.1 sequences are placed on JN.1> G21535C> C1762A> C11747T> C21535G and assigned as JN.1. Only a bit of JN.1.1 sequences placed on JN.1> C1762A> C25521T> C11747T> C5869T> T25521C are ass…
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Hi,
The script worked really well when I merged up to 255 loci from 196 species. However, I was having issue when the taxa number increased to 996, and the error message showed the process was kill…
ypoh1 updated
1 month ago
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Submitting Author Name: Klaus Schliep
Submitting Author Github Handle: @KlausVigo
Other Package Authors Github handles: (comma separated, delete if none) @emmanuelparadis, @liamrevell,@darunabas…
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Hi Patrick,
I've been using FASconCAT-G_v1.05.pl for a while without a problem, but I'm getting an odd error message with this new version. Here is the output when I run "perl FASconCAT-G_v1.05.1.p…
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I have been using TideTree successfully, but noticed that quite a few datasets tend to give this error and I am having trouble locating the source. I have used a more informative starting tree from th…
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A strategy worth testing for getting rid of some dodgy sequences and short-term time travellers is to exclude samples that exceed a given HMM cost (say, 10). If done naively, this would exclude all de…
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Hello,
I am keen of having conditional statements work. In tensor flow:
tf.cond( pred, true_fn=None, false_fn=None, name=None)
e.g. tf.cond(x < y, tf.add(x, z), tf.square(y))
However I can…