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It's unclear to me what is the difference betwen `MinimizerQueue` and `ImplicitMinimizerQueue`.
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Hi,
I tried assembling the mitogenome of my insect species using MitoZ. The final assembly is not circular, with a size of 15,442 kb. Additionally, the following genes are missing:
l-rRNA
tRNA-…
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K-mers on windows. Or thinking about mlst, hashes for genes. Or annotation-aware hash binning
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Hi,
I would like to use CASK and I have started with the database creation. Apart from problems with RepeatMasker input that I was able to solve myself (the script is not suitable for minor changes…
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Related to the https://github.com/marbl/ModDotPlot/issues/29 I thought to investigate by using test sequences.
I take a sequence from arabidopsis chr1 and copy paste a sequence 3 times,
```
%%…
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Hi @mourisl,
It was exciting to meet you at CSHL and I appreciate that you took some time to implement the feature we discussed.
I gave it a try this morning, and saving the trusted k-mers file …
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To support finding long k-mers, I tried re-installing in the build folder following instructions:
```
rm -Rf CMake* && cmake -DKSIZE_LIST="32 64 92" .. && make
```
where I chose multiples of 32,…
b2jia updated
3 years ago
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Dear developers of this great assembler,
I have a question concerning a weird k-mers histogram with 3 peaks for a definitely diploid fish genome. Please find the attached k-mers histogram as output…
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When using 30X hifi data, 0.16.1-r375 with default parameter produce a larger assembly fasta(the Genome size is estimated to be 2.2G, assembly result is 3.0G).Compared with the kmer distribution of an…
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We need to annotate manually-curated molecules with the following information:
- Target: mPro, Spike, ...
- Phenotypic Assay: 0 or 1
- Target Assay: 0 or 1
- Docking: 0 or 1
- IC50: value in uM…