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Hi installed ok now, but got this:
```
tutorial@tutorial-VirtualBox:~$ metabin -h
metabinkit v0.0.1
Error in library(optparse) : there is no package called ‘optparse’
Execution halted
```
…
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(the good news: metabin is installing and runnning well, and is much faster than bin.blast3!)
Example of issue:
Input: tests/test_files/2020_01.blast.filt.txt
metabin output: tests/test_files/2…
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Added test files to a new test_files folder. Includes one UNIO set (blast.filt+bins) and one VENE set. Also added disabled_taxa.txt (They are all tsv format)
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Hi Nuno,
I was just looking at mussels results and noticed that sometimes bacteria get weird designations
e.g. taxid 1884634 has the 7-level taxonomy of:
```
K | P | C | O | F | G | S
Bacteria…
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Hi,
I have a set of binary/dichotomous outcomes. I wanted to calculate the hazard ratio for meta analysis and network meta analysis. However when I look at "meta" package "metabin"function "sm" ar…
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Hi:
I had a question about the 95%CI appearance but the cilayout("(", ", ") resolved it for me.
Thank you for the nice package.
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This file contains the definition of the MAG class, which is basically a subset of the contigs in a metagenome. The issues that I came across are outlined below:
1. [x] The name of the script and t…
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Similar issues like this have been discussed but I still can't solve this problem. I have bytes that I want to write to a NAS over samba. I write the bytes into a tempfile.TemporaryFile then I try to …
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Hi Guido,
I am new to meta-analysis and your package has been of great help!
Pardon me for creating this issue about the code as well as the understanding of the DerSimonian-Laird method for th…
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Hi sorry to ask this question here, but I have searched stack exchange, the documentation and also the code to find an answer to this question. But when I calculate the odds ratio myself (and using t…