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Hi @AlexanderDilthey
We spotted an issue with misclassification, particularly within the Brucella genus. We generated FASTQ files containing simulated ONT reads for 4 Brucella species and analysed …
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Hi!
After mapping the reads, I am using the following commands to classify
metamaps classify -t 12 --mappings classification_BG1234_C --DB databases/miniSeq+H/
**ERROR**
terminate called after t…
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As your Document say , The primary goal of MetaMapLite to provide a near real-time named-entity recognizer which is not a rigorous as MetaMap but much faster while allowing users to customize and augm…
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Hello,
I am having issues in creating a custom database and need some help in resolving the issue.
I found ``` https://github.com/DiltheyLab/MetaMaps/issues/5``` to be helpful and following that …
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This work is partially finished here: https://github.com/metamaps/metamaps_gen002/compare/feature/json
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Fill in this stub dir: https://github.com/INCATools/ontology-access-kit/tree/main/src/oaklib/implementations/umls
We may want to have this implementation wrap two different aspects of UMLS
- lo…
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Hello, I am trying to let MetaMap process some translated german texts, which include words with the letter 'ß'.
After analyzing why the JSON output breaks, I found out that the character 'ß' seems…
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Install NIH software SemRep(requires MetaMap) which outperforms other relation extractors (ReVerb, Stanford) in analysis of biomedical documents.
https://semrep.nlm.nih.gov/SemRep.v1.7_Installation.h…
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Hello,
I've compiled MetaMaps using boost installed via conda (since I don't have admin rights on the cluster). First step (mapping) worked without any issues; however, classify command fails with…
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When reviewing and discussing Nextflow programming techniques with others, I often find myself landing on the topic of the "metaMap" and why its so useful for Nextflow programming.
However after r…