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NTR: microbiome sequencing design
definition: The microbiome comprises all of the genetic material within a microbiota (the entire collection of microorganisms in a specific niche, such as the human …
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Turnbaugh, P. J.
Ridaura, V. K.
Faith, J. J.
Rey, F. E.
Knight, R.
Gordon, J. I.
2009.
The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice
http://dx.d…
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Goodman, A. L.
Kallstrom, G.
Faith, J. J.
Reyes, A.
Moore, A.
Dantas, G.
Gordon, J. I.
2011.
Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mi…
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Zengye decoction induces alterations to metabolically active gut microbiota in aged constipated rats – Deliang Liu – Biomedicine & Pharmacotherapy
https://www.sciencedirect.com/science/article/pii/…
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High-Fat Diet Enhances the Liver Metastasis Potential of Colorectal Cancer through Microbiota Dysbiosis
https://www.mdpi.com/2072-6694/14/11/2573
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Hello Prof. Yu,
I find your clusterProfiler (http://yulab-smu.top/clusterProfiler-book/) a useful tool and tried to follow the tutorial.
Since I am working on the gut microbiome and have KEGG pathwa…
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Hi,
before deepening MintTea, I would like to know if the function can handle NA values. My goal is to analyze a dataset with two data frames, one with the taxonomic composition of the gut microbiot…
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Comparison of Co-housing and Littermate Methods for Microbiota Standardization in Mouse Models – Susan J Robertson et al. – Cell Reports
https://www.cell.com/cell-reports/fulltext/S2211-1247(19)3048…
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Oral microbiota of patients with phenylketonuria: A nation-based cross-sectional study – Memduh Bingöl – Journal of Clinical Periodontology
https://onlinelibrary.wiley.com/doi/10.1111/jcpe.13998
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More demo data sets are needed.
0) Use GrieneisenTS from *microbiomeDataSets* for some demo purposes.
1) Browse [curatedMetagenomicData](https://waldronlab.io/curatedMetagenomicData/) to identi…