-
Hi,
I am trying to correct a mitochondrial genome assembly, I thought it would be simple and straightforward, and I got an error:
I created a new conda environment, no issue during installation, b…
-
Good day
I Installed Bandage on my iMac desktop (Intel core i5, 8GB ram, AMD Radeon HD 6970M 1024 MB), and it worked fine for viewing bacterial/mitochondrial genome assemblies. The problem is when …
-
Hi, on https://www.mbru.ac.ae/the-arab-pangenome-reference/ it is not possible to download the assemblies. As soon as I click on links to download APR Nuclear or APR Mitochondrial assemblies, I get a …
-
I used NOVOPlasty to assemble the mitochondrial genome of my PE shotgun sequencing reads and it's been working fine. But there one sample that is simply not working. I know the sample is good because …
-
Hi Ryan,
I'm trying to finish some mitochondrial genomes that have initially been assembled from PacBio reads with Canu. The Canu assemblies give me a single contig, but almost always fail to circu…
-
Hi,
I would like to assemble the plant mitochondrial genome from the whole genome data. The expected total genome size is 1.7 GB Including chloroplast, mitochondrial and nuclear genome). But the mit…
-
I'm just starting with MITObim to get a complete mitochondrial genome from my data.
So far, I've gotten the maf file that seems to be successfully generated by using mira 4.0.2.
For example, some …
-
Hi, A problem arose when I used ONT data to assembly mitochondrial genome.
Here's the command I ran:
PMAT autoMito --task all -i ./pass.fq -o ONT_assembly -cs canu -st ONT -g 1000M -cpu 32
But so…
-
Pathway: oxidative phosphorylation (GO:0006119)
Complete gene set https://www.pombase.org/term/GO:0006119
The model is missing the
proton-transporting ATP synthase complex (GO:0045259)/
prot…
-
Hi,
Firstly, I want to thank you for this amazing tool! I've been using it consistently during my PhD, and it has been immensely helpful!
I have a few questions about the circularization check…