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We now dispose of motifs for all the datasets, but there are some choices to be made about the best strategy. I am now doing some tests with the leaderboard evaluation tool in order to chose the final…
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Hi, dear author, are these two models, MOTIFS-SGDet-none and Neural Motifs, the same? If not, which one is the baseline listed in the paper.
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Hi,
I am currently running an ATAC-seq dataset with 16 samples (with plans to expand in the future). The dataset involves two conditions, four treatments, and two replicates per treatment, and I w…
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Hi,
it would be great if you could enhance the explore_motifs() mode so several motifs can be plotted (currently only one is displayed).
Thanks!
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Il y a un nombre non négligeable de 404 sur les pages `users/rdvs#show` (+ de 100 par mois)
Une bonne partie de ces erreurs provient de la page de vérification des initiales (visible via le referer d…
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Sometimes drawing immediately after you have use the muse screws your dmg output so an option to add the motifs right before the muse is up would save time and also the problem with using motifs right…
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We seem to be getting the error of division by zero not possible, which I think it potentially means that we are not able to count any motifs in my hypergraph (tried with order 3). We seem to have a l…
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Hello,
In the modkit summary, the threshold is calculated as a 10% percentile. It's not clear to me of what exactly. Can you please clarify that for me? Next, after visualizing the bedgraph in IGV, …
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I have encountered this error:
```
ImportError: cannot import name 'default_motifs' from 'gimmemotifs.motif' (/opt/miniconda3/envs/celloracle/lib/python3.10/site-packages/gimmemotifs/motif/__init__.…
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Thanks for your great tool!
I encountered a problem when using a reference genome fasta file with lower-case alphabet: Although motifs were identified by STREME, no motifs were listed in the final …