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cultivarium
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MicrobeMod
A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
MIT License
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Reference genomes no longer available
#25
MarkusHaak
closed
2 weeks ago
1
Set output directory
#24
samuelmontgomery
opened
2 months ago
0
--percent_cutoff_streme parameter changes _methylated_sites.tsv output
#23
winterlich
opened
3 months ago
3
TypeError: can only concatenate str (not "NoneType") to str
#22
jbeckle3
opened
4 months ago
8
strain comparison
#21
stevebaeyen
closed
2 months ago
1
Significance of identified motifs?
#20
starkeynight
closed
4 months ago
2
Problem with mapped methylated sites
#19
MarioRinBarr
opened
4 months ago
5
All motif locations
#18
patrickwest
closed
2 months ago
1
Matching prodigal call with methylation location
#17
Ge0rges
closed
2 months ago
1
MAGs
#16
Thexiyang
closed
6 months ago
1
Support for 4khz Nanopore data
#15
09herbej
closed
6 months ago
2
v1.0.3
#14
alexcritschristoph
closed
6 months ago
0
Feature request: support for 4mC motifs with new models
#13
alexweisberg
closed
6 months ago
7
Permissions on s3 example files?
#12
JamesRH
closed
7 months ago
3
Unclear why motif is excluded
#11
alexweisberg
closed
7 months ago
4
docs: update installation instructions
#10
knightjdr
closed
6 months ago
1
Step 2 requires SamTools>=1.11?
#9
aforestsomewhere
closed
6 months ago
1
Fixing bug in test RM
#8
alexcritschristoph
closed
7 months ago
1
pytest fails in /tmp/...
#7
jowodo
closed
7 months ago
4
tags/release
#6
jowodo
closed
6 months ago
3
support for previously annotated genome in annotate_rm
#5
alexweisberg
closed
6 months ago
3
HMM gene coverage
#4
Ge0rges
closed
7 months ago
1
66% threshold rationale
#3
Ge0rges
closed
7 months ago
4
Conda package
#2
Ge0rges
opened
7 months ago
8
Version v1.0.1 merge review
#1
alexcritschristoph
closed
7 months ago
2