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Hi,
I imported the library predicted by sofware named MS²PIP into DIA-NN, and ended up with an empty matrix report.
However, when I use the library-free mode (DIA-NN) alone, the results are norma…
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I'm getting a mysterious pickling error when trying to use ms2rescore.feature_generators.ms2pip.MS2PIPFeatureGenerator. The error seems to be caused by having [UNIMOD:nn] variable mods in the ProForma…
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Hey everyone,
I have used msgf+ and now have either an mzid and/or a tsv results file. Now I wanted to convert this to a valid peprec file for ms2pip. I tried the conversion scripts but it seems li…
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Hi all,
I'm using CLI to run MaxQuant psm file.I've been downloading this xgboost model for half an hour and I see no progress.
Can anyone tell if there is something wrong with my settings?
…
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Hi,
Thanks for the great software. I am trying to convert a Mus musculus Uniprot/SwissProt FASTA to a spectral library using fasta2speclib. I am on a Threadripper 5995WX with 512GB of RAM. This …
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The generated file containing the weights of features coming from the different feature generators doesn't have any feature description. For MS2PIP mainly, most of the features are not comprehensible …
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I'm getting a persistent warning about OPENMS_DATA_PATH when I use ms2rescore.feature_generators.ms2pip.MS2PIPFeatureGenerator from a Python script.
Here's how I create the environment:
```
C:\p…
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Hi,
I'm using C# to access MS2PIP webserver via the RESTful API.
However, I immediately encountered an error when requesting a respond with the message: "500 Internal Server Error".
I'm not sure …
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Hi,
I attempted to process a custom FASTA file using the online "From protein FASTA file".
The processing of FASTA_A was successful, but for FASTA_B, it displayed "Something went wrong.
[FASTA…
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### Bug summary
Python returns `ValueError: keyword grid_b is not recognized; ` when running SinglePrediction.plot_prediction.
This is related to spectrum_utils version 0.3.5 which still utilizes …