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Can we add instructions for (A) making a reference profile and (B) making a reference profile from two or more source studies?
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The TCR script creates a 14x94 matrix, which will throw an error if the dataset does not have 94 segments. Proposed fix: change `nrow=94` to `nrow=length(rownames(obj2))` https://github.com/Nanostri…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/kimsjune/shinyDSP
Confirm the following by editin…
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Hi, I am trying to use the crop function on my data but it is giving the following error
```
> basal.crop head(coords)
x y cell
1 -36765.44 130532.4 C16.S1_39_1
2 -367…
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Hi
i cannot find Cosmx cell label data in nanostring web page.
How can i get this data?
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Hi @ebecht
First of all, thank you and your team for developing MCP-counter.
But I still have a question that may be annoying to ask.
Because our team is using the panel from the NANOSTRING compan…
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Hi!
I just read through your tutorial - thanks for a great work!
I just have one question regarding the input files needed for running an analysis on data from your own experiment.
How do I g…
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Hello,
I get an issue when trying to apply the semisupervised algorithm to my data:
```
phase 4: classifying all 39069 cells
Error in logliks[use, , drop = FALSE] :
(subscript) logical subsc…
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If no / not enough gene pairs are above the roundcortozero threshold, we get this error when trying to build modules:
```
Error in if (meancor > min_module_cor) { :
missing value where TRUE/FALS…
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Hello,
Nice work!!
I just went through the article and the GitHub page, but I am not able to find how to get the three files mentioned, count.txt and other two as input. From the machine I hav…