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In the current code, it's possible to export invalid json to DS because provenance fields are being populated during exporting and validation has already happened by then.
These fields should be po…
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These came up in a query written by @turbomam. We need to do the following:
- [x] decide on a env_broad_scale term for these samples
- [ ] If different than GOLD let them know so they can update the…
aclum updated
3 months ago
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Hi Deriva team,
Question:
I have a “superset_collection” with X number of "subset-collections" and "xxxx_in_collection.tsv" files are filled including each subset-collection. If I download the bdb…
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I am not sure how to write this example according to the structure. Would like to see some completed examples
Completion
- [x] Provide Montana an export from NCBI of metadata records that includ…
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Somehow the usage of `Dataset` got mangled up. There was never agreement, at least with metadata, that an object can only belong to only one `Dataset`. For data management & mining purposes, this doe…
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We need to capture the precision of the lat_lon. (1 decimal, 2 decimal, etc.)
cc @cmungall @ramonawalls @lschriml
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- last version of the raw reads for Leptospira assemblies **did not have quality check** nor **trimming** done before assembly.
- to assure the quality of all isolates before assemblies, we will **re…
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Currently, the WDL input compound type ```Map[]``` is not handled by the translator. (https://github.com/openwdl/wdl/blob/main/versions/1.1/SPEC.md#mapp-y)
~~A workflow using Maps is given in this …
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The goal is to develop an ETL script to convert NMDC submissions to NCBI submissions using version 6.0 MIxS packages. We will start by developing support for the following packages:
- soil
- water
- h…
aclum updated
3 weeks ago
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When trying to figure out how to document metabarcoding data, I came across some things that were not super clear to me.
Any insight in this question is much appreciated, and perhaps the terms could …