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I was use NGLess deal with the original fastq reads to abandon short and low quality reads directly. I wander if it is needed to remove the adapter with Trimmomatic before NGLess operate. Any senior a…
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While doing the integration tests for the test scripts present in
https://github.com/ngless-toolkit/ngless/tree/master/tests/motus
on running
`ngless motus.ngl` there is an error being generated.…
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Running the test suite from the hackage sdist fails as it seems to lack some test data.
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Hi!
I was wondering if SemiBin could accept a contigs coverage table generated by another tool (e.g. jgi_summarize_bam_contig_depths) instead of computing it from the bam files?
I think it has s…
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Unable to run NGless for the first time.
It says, "Could not connect to https://ngless.embl.de/resources/Modules/motus.ngm/2.5.tar.gz (got error code: 404)"
Is the file present somewhere else from…
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Hi,
I have one question about how to use the metaSNV_subpopr.R script. In the manual that you attached there is a section on how to calculate the abundance of genes:
"Gene abundance profiles can…
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Dear Sir:
I install new version 1.3 of ngless recently using conda ( in the past, I had the 1.1 version and I removed the old one) by creating a new env.
However, when I tried to run this. I found …
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In order to support more distros, it would be great to have one of the above. There's surely a way to publish those with a CI at every release. Hopefully it will reduce the size of the executable too …
ghost updated
2 years ago
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After #42
I tried with unziped fasta. I run into this error in Semibin Train.
```
2021-09-12 01:20:53,955 - Start training from one sample.
2021-09-12 01:20:57,764 - Generate training data of…
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While trying to debug an [NGLess bug report](https://groups.google.com/g/ngless/c/j4ddHhdPOHg), I noticed that the output of motus (database 2.5) seems to be odd in a very particular way
Example
…