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Hi @constantinpape
I am trying to implement the slicing for https://github.com/mobie/mobie-utils-python/pull/130
and get stuck in the Downscaling workflow.
```
File "code/cluster_tools/cl…
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Should be super easy. The harder part is to add Xenium toy dataset for unit testing.
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Hello support,
We have received a new Molecular Devices instrument. I was wondering, if the HTD format support could be provided in Mobile-Viewer-Fiji. I could generate files now.
best wishes
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We need a converter for data generated by the [OpenCell pipeline](https://github.com/czbiohub/dragonfly-automation) such that it can be easily viewed and processed by downstream analysis pipelines.
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Upon parsing of the raw images we are currently identifying all the plates which are available in a given input folder. In current examples there is only one plate, but in principle there could be mor…
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This issue was exposed by the ongoing investigation about converting IDR studies and more specifically the work in https://github.com/IDR/bioformats2raw/pull/1
The converter failed when writing out…
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Right now, we have two different kinds of ROI tables (stored as AnnData tables in the `/tables` subgroup):
* FOV/well ROI table are generated as in: mlf/mrf file --> pandas dataframe --> anndata tabl…
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This is about whether we're putting the right number of elements into the `coordinateTransformations` in the OME-Zarr and reading them out flexibly.
I have been working more with the OME-Zarr files…
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Hi,
I've used NGFF-Converter on Ubuntu 20.04 to transform some tif files into zarr.
Jun 14, 2023 10:58:58 AM com.sun.javafx.application.PlatformImpl startup
WARNING: Unsupported JavaFX…