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A big data source that we will be ingesting multiple studies from in the coming weeks/months is NCBI, and for this we need a generic NCBI study/BioProject to NMDC ingest pipeline/importer/translator (…
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Some resources to consider including:
https://applied-llms.org/
DragonAI training
Ontogpt training
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Please help me troubleshoot this error. How do I add my custom template/schema?
After following the guidelines here: https://monarch-initiative.github.io/ontogpt/custom/
I am getting:
ModuleNot…
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Because I'd like to extract ontologies from non-English texts. Many thanks!
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OntoGPT processing could be handled through this project, too - just add it to the dependencies and import:
```python
from ontogpt.engines.spires_engine import SPIRESEngine
```
A more hard-coded v…
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I am presenting these two issues as one, but I don't know if they are related.
I am interested in using OntoGPT with a HuggingFace model remotely i.e. through the API, without downloading the model…
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Re: comments from @leokim-l on Slack, and my own suspicions that the oaklib normalization functions were being called too often, I tried to find out how much impact connection speed/availability had o…
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Reproduced issue pointed out by @justaddcoffee , when running current version of MALCO https://github.com/monarch-initiative/malco/commit/42bab8d0da7f2651a3c28b2c0593d4ae9ecc81cc in branch https://git…
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@caufieldjh question about OntoGPT grounding in Malco cc @leokim-l
I'm running malco thusly:
`pheval run -i ./inputdir -t tests -o ./outputdir -r malcorunner`
and I see lots of warnings like t…
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When running [multilingual analysis](https://github.com/monarch-initiative/ontogpt/blob/bd74181b339a1ae112f5bafb7787241bc82e8120/src/ontogpt/cli.py#L1221), we are observed many fewer results than expe…