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Hi,
my name is Jordi and I want to use the file svpop-truth-baseline.vcf.gz from https://s3-us-west-2.amazonaws.com/human-pangenomics/index.html?prefix=vgsv2019/vcfs/
But I dont know how it has …
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**1. What were you trying to do?**
I am trying to reproduce the steps described in `https://github.com/cgroza/personalized_genomes_gbio/issues/1`, however, after I built the vcf file, and use `…
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in addition to the thing we've discussed for just having an entry box that will initiate a new search with a given gene, sometimes it is useful to just want to ask to have a given gene (or possibly a …
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Hello,
Sorry to bother you again.
I'm attempting to run Novel-X on the following 10x Genomics bam file : ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/AshkenazimTrio/HG002_NA24385_son/10XGenomics…
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I have a sequence of `27bp length`, and I want to find out the `exact match of this sequence, and all the sequences that have 1 mismatch and 2 mismatch`, by the method of graph.
I used `bowtie1` to…
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Hi there,
In order to perform somatic variants (mutations, SVs, CNVs) calling, I'm looking for vcf file designed for the chm13 Human reference genome.
I guess these files should be available somewh…
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## Motivation
Pangenomes are key to understanding the distribution of gene content and synteny across closely related genomes. Currently, the driving force behind this strategy is sequence alignmen…
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Hi, we recently downloaded the Pangenome assemblies in the AGC format, and we extracted individual assemblies in fasta format. We noticed that contig names do not match human chromosome names. Are we …
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https://github.com/human-pangenomics/HPRC_metadata/tree/main/data/hprc-data-explorer-tables
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First off, the only way I have found that actually works to incorporate custom data is to explicitly add records to config.json and recompile the app: no "custom data (mounted files)" appears as an op…