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some of the overlapping peptides self-links (known to be between chains) disappear and don't come back when toggling 'overlap' filter after having messed with distance filter
seen in @giulia9picc…
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Hope it finds you well.
I'm using DIA-NN 1.9 and Skyline (64 bit) 24.1.
I'm trying to use following skyline visualiation function.
_Skyline. To visualise chromatograms/spectra in Skyline, analy…
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#### Current behavior:
Hi all,
The reactions in the subsystem `Peptide metabolism` are all **reversible**, meaning that peptides can be formed from individual amino acids without an ATP cost. Also…
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Error downloading object: saved_models/protbert_feature_before_pca/peptide_webserver.pkl (ad98a46): Smudge error: Error downloading saved_models/protbert_feature_before_pca/peptide_webserver.pkl (ad98…
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Such a command will result in an immediate "finished" signal from the server, and the uploaded results RData will not contain the `results_package` variable.
```
taskobj
SendOut(interface = in…
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Hi, Vadim,
If I want to extract peptide quantification as following, could I also got their protein names?
peptides.maxlfq
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Hello,
In Analyst Fragpipe, how to filter at least 2 peptides per proteins with the DIANN out put ?
Is it possible to use DIANN 1.9.2 in Fragpipe ?
TaniaK
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`{"detail":"Command '['netMHCpan', '--version', '_MHCTOOLS_VERSION_SNIFFING']' returned non-zero exit status 1."}`
```
# /opt/netMHCpan-4.1/Linux_x86_64/bin/netMHCpan --version _MHCTOOLS_VERSION_S…
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### Description of the bug
This command is failing:
```
#!/usr/bin/env bash
set -e # Exit if a tool returns a non-zero status/exit code
set -u # Treat unset variables and parameters as an e…
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Dear developers,
I am encountering an issue with peptide-shaker, which I paste here:
# ------------------------------------------------------------------
# PeptideShaker 2.2.25 Report File
#
…