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Hi, I'm looking to predict genes for my insect genome. For most genes the prediction is working out good, but egapx is missing predictions for some species specific, single exon genes (experiementally…
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Hi,
I am trying to run a quantification analyses using artMS and get the following error:
```Error: Assigned data `dfdc.final[[x]] - dfdc.final[[y]]` must be compatible with existing data```
T…
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I will likely not implement it in #41 where I planned to because the PR is already enormous. So I write it down here.
We need to support secondary structures for cyclic proteins. Some thought were …
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Apparently REVIGO has changed format of the file that is obtained by pressing Export results to text table (CSV) in the web interface. Colum `representative` in revigo.csv file now lists GO ids inste…
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Hello,
After much discussion with the multi-org group @geneontology/multiorganism-working-group
@Antonialock and @FJungo
We propose to change all the terms of pattern 'envenomation resulting…
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## Purpose
Because it's a complicated topic, and to maintain the ability to restart this discussion in the future, I think it's important to record our design decisions with regard to stereochemistry…
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**Update:6/19**: So, looking over the Cell Ontology, we could just go through the terms that it imports from GO, including GO:_immune system process_ and the many subclasses descending from this term,…
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Hello, I would like to clarify what would be a better way to proceed with the PTM search. In case I have 10 different modifications (some on the same amino acid, some on the different, I expect only o…
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Hi, thanks for the great project. I'm attempting to load the latest Unimod XML file into Postgres using pyteomics and have encountered a few errors that I've attempted to solve along the way. I've doc…