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Beginning with sequence-based searches of the literature via PaperBLAST and using the sequences acquired from PomBase, UniProtKB
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e.g. the query
```SPARQL
SELECT DISTINCT ?item ?itemLabel ?_PubMed_ID
WHERE
{
?item wdt:P31 wd:Q13442814 ;
rdfs:label ?itemLabel .
OPTIONAL { ?item wdt:P698 ?_PubMed_ID. }
FIL…
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Hi,
I was wondering if assigntaxonomy remove some reference sequences from customized DB.
The customized reference DB I used contains 370K sequences.
Some sequences have the same rank level name w…
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I'm looking to integrate my FASTA sequence into the evolutionary analysis of Influenza A/H3N2 using Nextclade and visualize it appropriately. While I utilized Nextclade for analysis, I encountered dif…
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We have an implementation of interproscan designed to work with other dbs and also within our workflow services system. There are two things we need to make sure.
1. ps_scan.pl (used for prosite) wi…
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**Query**: `T24046C, C27059T` or `T8908C, A13693G, C22986T`
**Earliest seq**: 2023-12-02 (`EPI_ISL_18598919`, England)
**Latest seq**: 2023-12-02 (`EPI_ISL_18598920`, England)
**Sampled Countries**…
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**Defining Mutations:** `GJ.1.2.6` > `C3165T(ORF1a:A967V/nsp3_A149V), C3768T(ORF1a:T1168I/nsp3_T350I), C4777T, G12131T(ORF1a:A3956S/nsp8_A14S), A18121G(ORF1b:S1552G/nsp14_S28G), G21853T(S:K97N), T2292…
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**Query:** `C7113T, G22927T, C29535T`
**Earliest seq:** 2023-09-14 (`EPI_ISL_18294822`, Islamabad)
**Latest seq:** 2023-09-17 (`EPI_ISL_18294827`, Islamabad)
**Sampled Countries:** Pakistan (4)
…
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Hi, I encounter the same problem as in https://github.com/facebookresearch/LAMA/issues/10.
And I found the reason why 2 examples are filtered is that the `obj_label` are `1970s` and `1990s`. And in `…
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**Submitting author:** @limengbinggz (Mengbing Li)
**Repository:** https://github.com/limengbinggz/ddtlcm
**Branch with paper.md** (empty if default branch): main
**Version:** v0.2.1
**Editor:** @Niko…