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Running:
`
asm = Assembly((pdonr_plasmid, insert), limit=6, max_nodes=10)
`
gives me:
`
TypeError: Assembly.__init__() got an unexpected keyword argument 'max_nodes'
`
Is this intended, or sho…
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### Ask away!
Hello,
I ran a prepared library of 9 rAAV samples on a MinION flowcell and would like to use the wf-aav-qc workflow to analyze the fastq data. I have successfully used the workflow …
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### Detailed description of the problem
Tooltips can't be seen when hovering over the buttons in the OVE. It looks to me as if they are displayed above the button (above the upper edge of the windo…
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Dear authors,
I wonder how you define and compute (Boolean variable) a hit to database, e.g., plasmid_proteins?
Thanks
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Can you make linear plasmid map with this program. I would like to show primers on the DNA sequence and I can't do that with a circular map due to the sizes of the primers
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Sent Steve's plasmids (Plasmid ID 1-13) for sequencing, and it seems they're having some trouble.
Calling Genewiz, they offered to help us out with a few more sequencing reactions for free, but eve…
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I would like to contribute to this effort, but I want to make sure that my methods are sound. I would love feedback and insight.
I think I can create a toy dataset for some plasmids containing AMR…
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Hi,
I am trying to run deeplasmid on the HPC at my workplace. The computer support team have installed the software. We have been trying it out and came across this error where it cannot find the …
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@gokeson Could you provide advice on how the pipeline should handle plasmids? In a test run I detected a 7.5kb plasmid, full length!
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Hi!
I am grying out this tool now. I installed via conda, and am using it on a slurm run cluster with srun. Have asked for 10 cpus. I have a file list containing 8 plasmid fasta seqs. The plasmids …