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(Requested by @martin2urban)
The link 'List sessions by annotation type' on the admin pages currently shows counts of annotations for each annotation type in each publication. Martin was wondering …
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Thanks in part to @mellybelly @kltm @lwinfree and all the reusable data team, StringDB is now all cc-by, so we can pull a lot more data. Currently we are only ingesting the protein.links.detailed fil…
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for example:
https://twitter.com/NorSivaeb/status/1113123527492866048?s=09
https://twitter.com/NorSivaeb/status/1113124343037464577?s=09
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GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000413 protein peptidyl-prolyl isomerization
GO:0001932 regulation of protein phosphorylation
GO:0001933 negat…
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A case that is commonly encountered in molecular biology articles is the description of interactions that occur within a sub-cellular compartment (e.g. nucleus) or near a cellular structure (e.g. plas…
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**In broad terms, what are you trying to do?**
The [Diamond Light Source XChem facility provides a fragment screening service](https://www.diamond.ac.uk/Instruments/Mx/Fragment-Screening.html) for …
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Hi @sgibb - following up with our conversation about `unimod` at the EuroBioc2018 conference, I would suggest the following class (see also #6).
```r
setClass("Modification",
slots = c(mo…
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Hi,
Apologies if I missed it in the docs, is it possible to specify scoring neutral losses on modifications in MSGF+. For some mod types, they will not be identified well (or at all) unless losses of…
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Hi Ming @mwang87 !
I, @lfnothias, and @hoseinmohimani have several requests & suggestions about updating [In Silico Tools](https://gnps.ucsd.edu/ProteoSAFe/static/gnps-theoretical.jsp) webpage. Some …
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Hi Peter
Looks like these Reactome pathway xrefs are missing:
gluconeogenesis (GO:0006094) = R-HSA-70263
fructose biosynthetic process (GO:0046370) = R-HSA-5652227
galactose catabolic process vi…