-
I'm trying to understand the gene level outputs, which I think I can find in HMM_CNV_predictions.HMMi6.leiden.hmm_mode-subclusters.Pnorm_0.5.pred_cnv_genes.dat. Specifically, I'm trying to understand …
rpeys updated
8 months ago
-
Hi!
I am using AUGUSTUS to predict genes in a new species. I am following the current protocol of AUGUSTUS and I extracted the flanking regions of the genes of my training and test set.
I was wonder…
-
hi,
I download the vOTU.fna (There are 5251 vOTUs in there.)data in the text and used the MGV pipeline(https://github.com/snayfach/MGV/tree/master/viral_detection_pipeline), like this
````
cond…
-
Hi, is it possible to stringently require all introns considered by braker to have support in the RNA-seq data provided? I am finding that braker is adding a lot of introns to gene predictions that ar…
-
Hello, I received an error for each line in the script with the infinite repetitions:
print() on closed filehandle OUT at /path/ezTree/ezTree line 291, line 4.
"Predicting genes for " and "Runnin…
-
@andrewelamb, adding the argument `cohort` to a query makes it return no results. Example below:
Before:
```
#getting ICI data
#datasets that we have in the iAtlas database
ici_datasets
-
I was able to download the paper feature training set (per #7), munged successfully and went ahead and filtered my Magma output (which is in ENSG format as with the example) to only the genes present …
-
Hi,
I have a question about the output genes. I used Prokka to predict listeria genes and I have many inlA genes predicted (inlA-1, inlA-2, inlA-3 ...). I am getting confused on how to interpret …
-
## Description
From the predicted results and an established method such as TSSpredator, we want to identify which TSS are found in both and which are unique for each class. Also, if they have uniq…
-
Hello Developers,
I predicted the plant genome and obtained about 48,000 and 70,000 genes using braker and funannotation pipeline RNA-seq and protein, respectively. Other people did another genome …