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Dear all,
The proposal has been made to obsolete:
GO:0015680 protein maturation by copper ion transfer
GO:0097428 protein maturation by iron-sulfur cluster transfer
GO:0110147 protein maturatio…
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Hi all,
I had a quick question regarding how the calculation of protein coverage is performed in the `protein.tsv` report. I was trying to compute protein coverage by using the results that are in …
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Nice job you have done! I noticed in your article that you have done some work on protein property prediction. Could you please upload the code for this kind of task, or give me some advice on how to …
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I fed an octameric helix bundle - the same protein sequence copied 8 times, and a small molecule into the chai1 model's web server and my own locally built version of chai1 - November 16, 2024, but th…
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Dear OpenFE team.
Thanks for this awesome work.
This is related to https://github.com/OpenFreeEnergy/openfe/issues/633 https://github.com/OpenFreeEnergy/openfe/issues/634 and https://github.com/Open…
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From @ValWood at https://github.com/pombase/pombase-chado/issues/1224
```
Our MGI ISO xrefs are failing checks.
WARNING - Invalid identifier:GORULE:0000027: 1298204 does not match any id_syntax…
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Hi whoever sees this post,
I am running BRAKER with only proteins as the input for this stage. I continuously got this message - ERROR in file /opt/BRAKER/scripts/braker.pl at line 4178. I tried to…
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Hello and congrats again to the Baker lab for the well-deserved Nobel Prize!
I'm trying to achieve the functionality of RFDiffusion+ProteinMPNN with Protein Generator. I have tested on three system…
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Hey PPanGGOLiN-Team,
I get the below when running `ppanggolin all` version 2.1.2. I want to make the switch from version 2.0.5, where analysis of the same input data works fine.
```
Traceback (…
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Hello.
I am trying to find a way to save the whole protein structures with all rotamers of the mutated residue which don't have clashes.
The xl.mutate function uses only the highest probability rota…