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Hello!
I'm having a slight issue with the annotations generated by EGAPx. When I translate the CDS into a protein sequence, I'm seeing a lot of premature stop codons. This is a species where I am s…
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Hi!
I have 921 eukaryotic genome assemblies - from NCBI and literature - I would like to run ContScout on with nr as the database.
Running 5 assemblies initially, 2 completed successfully (run …
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The list_init API response depends CSV files "generated/misc/list_init_categories.csv" and "generated/misc/list_init_fields.csv" I have initiated that you will start maintain. Please update those file…
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In table.smk, the rule vembrane_table calls get_vembrane_config to get the parameters for the vembrane header table. This should add the annotation fields from config.yaml.
Example from config.y…
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Please provide as much information as you can:
* **GO term ID and Label**
GO:0097159 organic cyclic compound binding
Definition
Binding to an organic cyclic compound, any molecular entity that…
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* **PTHR ID & PTN node:**
From todays ontology editors discussion hom6 should not be annotated to methionine or threonine biosynthesis
https://github.com/geneontology/go-ontology/issues/28911#issu…
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GO:2000756 regulation of peptidyl-lysine acetylation
GO:2000757 negative regulation of peptidyl-lysine acetylation
GO:2000758 positive regulation of peptidyl-lysine acetylation
GO:2000759 regulatio…
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Hi Vizueta,
Thank you for developing a favorable tool for gene family annotation, but now I have some problems.
Some sequences of this ***_genomic_and_annotated_proteins_trimmed_idseqsclustered.…
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* **InterPro ID / label**
IPR012080
* **Example sequences with problematic annotation (ID + gene/protein name):**
https://www.ebi.ac.uk/QuickGO/annotations?geneProductId=P78780&aspect=biolo…
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Hi,
HydRA is failing to add annotation track to the occlusion map. I am using the parameters and annotation file as recommended. Could you help me fix this issue?
Many thanks,
Bandana