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snakemake-workflows
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dna-seq-varlociraptor
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
MIT License
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fix: fusion sample selection
#310
FelixMoelder
closed
4 days ago
0
chore(master): release 5.8.0
#309
github-actions[bot]
closed
3 days ago
1
feat: mutational signatures
#308
FelixMoelder
closed
2 weeks ago
0
feat: download alphamissense scores
#307
FelixMoelder
opened
3 weeks ago
0
feat: support selecting the fdr control mode via the config
#306
johanneskoester
closed
4 weeks ago
0
ci: Add fetch-depth: 0 to linting job
#305
fxwiegand
closed
1 month ago
0
fix: download sra
#304
FelixMoelder
closed
1 month ago
0
chore(master): release 5.7.0
#303
github-actions[bot]
closed
4 weeks ago
1
feat: add linkouts to non-coding tables
#302
FelixMoelder
closed
1 month ago
0
feat: Add improved visualization for clinical significance
#301
fxwiegand
closed
1 month ago
3
fix: use latest datavzrd wrapper that integrates template rendering
#300
johanneskoester
closed
2 months ago
0
fix: fusion candidate filtering and add HGVSc to variant datavzrd report
#299
FelixMoelder
closed
2 months ago
0
chore(master): release 5.6.0
#298
github-actions[bot]
closed
2 months ago
1
feat: add maftools output
#297
dlaehnemann
opened
2 months ago
0
feat: reduce fgbio memory usage
#296
FelixMoelder
closed
2 months ago
10
chore(master): release 5.5.0
#295
github-actions[bot]
closed
2 months ago
1
feat: add alphamissense linkout
#294
FelixMoelder
closed
2 months ago
0
chore(master): release 5.4.1
#293
github-actions[bot]
closed
3 months ago
1
fix: use latest wrapper for obtaining known variants
#292
johanneskoester
closed
3 months ago
0
fix: update to latest cutadapt
#291
johanneskoester
closed
3 months ago
0
fix: use latest wrapper for obtaining known variants
#290
johanneskoester
closed
3 months ago
0
chore(master): release 5.4.0
#289
github-actions[bot]
closed
3 months ago
1
feat: add ability to store variants in a population database (BCF)
#288
johanneskoester
closed
2 months ago
1
feat: support alphamissense and spliceai
#287
FelixMoelder
closed
3 months ago
0
fix: avoid piping if there is no glob pattern in the given fastqs
#286
johanneskoester
closed
3 months ago
0
chore(master): release 5.3.1
#285
github-actions[bot]
closed
3 months ago
1
fix: require Snakemake 8
#284
johanneskoester
closed
3 months ago
0
feat: add ScanITD candidate calling
#283
dawidkrzeciesa
opened
4 months ago
2
feat: render canonical transcript source
#282
FelixMoelder
closed
2 months ago
1
chore(master): release 5.3.0
#281
github-actions[bot]
closed
4 months ago
1
perf: reorganize tests to first only do dry-runs and then run long and short tests in one runner each
#280
dlaehnemann
closed
7 months ago
0
feat: colored tick plots in datavzrd report
#279
FelixMoelder
closed
7 months ago
0
fix: unique values when extracting samples column for repeated samples (in multiple groups)
#278
dlaehnemann
closed
7 months ago
0
chore(master): release 5.2.0
#277
github-actions[bot]
closed
7 months ago
1
feat: improve and run sra download ci test case
#276
dlaehnemann
closed
7 months ago
1
feat: map primers by bwa and update datavzrd template
#275
FelixMoelder
closed
7 months ago
0
feat: add option to allow mapping to pangenome
#274
huzuner
opened
7 months ago
1
chore(master): release 5.1.0
#273
github-actions[bot]
closed
7 months ago
1
fix: update fastqc wrapper to `v1.10.0` to include memory parsing fix
#272
dlaehnemann
closed
7 months ago
2
feat: genomenexus link
#271
FelixMoelder
closed
7 months ago
0
feat: gene coverage report
#270
FelixMoelder
closed
7 months ago
0
Workflow fails due to multiqc
#269
FelixMoelder
closed
8 months ago
0
chore: fix free disk space
#268
johanneskoester
closed
8 months ago
0
chore(master): release 5.0.2
#267
github-actions[bot]
closed
9 months ago
1
feat: annotate_spliceai
#266
FelixMoelder
closed
3 months ago
0
fix: sample has umis
#265
FelixMoelder
closed
10 months ago
0
chore(master): release 5.0.1
#264
github-actions[bot]
closed
10 months ago
1
fix: general fixes and optimizations
#263
FelixMoelder
closed
10 months ago
1
fix: switch mem_gb to mem_mb
#262
dlaehnemann
closed
10 months ago
9
chore: run apt-get update before disk cleanup
#261
johanneskoester
closed
10 months ago
0
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