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Hi Kaiyi and other authors,
Congratulations on this paper! The results look very promising, and I cannot wait to apply it to my project.
As I just started to run these codes.
In the extract.…
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I'm trying to use [HuggingFace's ESMFold](https://huggingface.co/facebook/esmfold_v1) to predict 3D protein structures from the protein sequence. I've got a PDB output that loads just fine on the [RCS…
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Hi author,
All of my package version is same as README, but I am using a RTX 4090 GPU.
After I run this command: `python main.py --mode=0 -F=../1ypo.pdb --gpu=0 --fold=1`
I got this:
```
(gnn_d…
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Hello,
Thank you again for your help in my previous issue. I can finally run the ProtST task on my cluster using one GPU. However, I need clarification about the command that you provided.
I wan…
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- Could we create a "Predicted Enhancers" section to replace the "Regulatory Regions" section? Then we can show elements that are predicted to regulate the gene (as on the variant page), rather than …
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We have built a mutant library for cucumber and have completed resequencing some of the individual plants, finding a number of proteins with non-synonymous mutations. We have translated these proteins…
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- The issue is related to the user-provided proteins feature and its associated issues.
- I am trying to use bakta to perform annotation on a phage predicted protein file that used Phanotate. I wa…
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Hi, I'm looking to predict genes for my insect genome. For most genes the prediction is working out good, but egapx is missing predictions for some species specific, single exon genes (experiementally…
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https://doi.org/10.1038/nature11503
>The genome-wide identification of pairs of interacting proteins is an important step in the elucidation of cell regulatory mechanisms1, 2. Much of our present kno…
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Hi @bcov77,
I'd like to kindly ask your insight in complex docking task I'd like to achieve.
I have predicted an RNA structure (e.g. nstruct=50) from sequence (~80b) w/ and w/o specifying the R…