-
Dear Dr Judemir Ribeiro,
I'm pretty interested in your recently published tool dr-sasa, which can be used to calculate solvent-accessible surface area (SASA).
In my study, I want to calculat…
-
Hi,
I followed the readme to install the DiffDock-L as follows:
conda env create --file environment.yml
conda activate diffdock
However, when I tried running the "interface" python I faced the…
-
I keep getting CUDA out of memory warning
Thanks
-
Hi,
I have a project for homodimers study. And i want to identify the interaction interface of the dimer. So I did an experiment with 14N and 15N proteins (used in a 1:1 molar ratio) . I want to …
-
Hi @GDKO,
it's me again @bheimbu. I have a question concerning the output of `avp prepare`…
```
query name donor ingroup AI HGTindex query hits number AHS outg_pct
229769_8676 Uniref90|UniRef9…
-
As seen in #701, the way the MinHash object interface works for protein MinHashes is undocumented and quite possibly just stooopid.
A few issues:
* per [this comment](https://github.com/dib-lab/…
-
I just wanted to repost the notes on what goes into a "typical protein:ligand setup pipeline" from our meeting at MolSSI on 8 Oct 2016.
---
# Contributors
* John Chodera
* Julien Michel
* Peter…
-
I suggest a reorganization of the categories to sort out current overlaps and redundancies and make icons easy to find.
After looking through the different categories I came up with the following b…
-
- [x] Import ppi-query as a maven module inside PMB
- [x] Test invoking ppi-query function from PMB
- [ ] Define interface between ppi-query and PMB
- Data interface for proteins, interactions, e…
-
Hello,
I’m contacting you to understand better if there is any restriction on using the scTranslator model for research purposes. I've tried sending you an email directly, but your email server bl…