-
Hello,
I downloaded a protein structure from AlphaFold (PDB) and tried to use PDB2PQR but it gets stuck at "pending job start" for multiple days straight.
Bw
Hillary
-
Hi, I love your work and the possibilities that offer being superfast. I was wondering if is it possible in binder design to only design specific residues of the binder knowing the structure of the ot…
-
**The problem**
Gene info, including PDB ids comes from https://mygene.info. But for some genes PDB has multiple ids. I.e. for STAT3 mygene.info returns:
[5AX3](https://www.rcsb.org/structure/5AX3) …
-
It would be nice if the ribbon would re-render every time the backbone coordinates of the chains changed. Oxygen atoms and secondary structure would have to be re-assigned.
Here's my attempt at imp…
-
Hi there,
Would it be possible to add an additional type of representation for protein structure beside cartoon, stick and lines? A tube-like representation would be useful for me, attached an exam…
-
Dear team,
Thank you very much for providing Open-ComBind as a command-line tool for docking pose selection. I have results from a previous docking job using GNINA with CNN-scoring. I have 10 prote…
-
Since I can run [Predicting Protein Monomers example](https://github.com/baker-laboratory/RoseTTAFold-All-Atom?tab=readme-ov-file#predicting-protein-monomers) well, I tried [Predicting Covalently Modi…
kimdn updated
2 months ago
-
Hi,
As searching for protein-protein interactions, my aim was to find similar interfaces in the PDB with Foldseek-multimer. I thought it would only return hits where the two similar chains are in i…
gezmi updated
1 month ago
-
Dear Foldseek Team,
I am reaching out to inquire about the possibility of developing an API to facilitate programmatic access to the data hosted on https://cluster.foldseek.com/. The ability to fe…
-
output_monkey_uniprot_pdbfiles folder is corrupted