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Just noticed a series of errors produced by IMGTTargetProvider when running the testIMGTTargetFeatureProvider tests. Needs digging into.
Note that this has been occurring for quite some time (unsu…
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Hi, I'm trying to run model using an example file, but there's an error.
`$ ../run_RF2.sh rcsb_pdb_8HBN.fasta -o 7UGF`
```
Running HHblits
-> Running command: /home/yt/RoseTTAFold2/input_prep/m…
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**Describe the bug**
as title said
**To Reproduce**
```python
PDB('2d4q').rcsb_cluster_membership(entity_id=1, identity_cutoff=100).result()
```
rcsb_id
score
cl…
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PDB changed its endpoint for serving PDB data from http://www.rcsb.org/pdb/files/ to http://files.rcsb.org/view/ . See also https://github.com/cBioPortal/cbioportal/pull/1434.
So it would be good to…
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Dear Developers,
Running an exemple ("pywater 4lyw, A, 95") returns **"HTTPError: HTTP Error 404: Not Found"**.
> Traceback (most recent call last):
File "C:\Users\MaxPlanck_Lab1\PyMOL\lib\s…
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RCSB PDB already uses a GraphQL server, so instead of schema-stitching, it makes sense to use a federated server to include links. https://www.apollographql.com/blog/apollo-federation-f260cf525d21/
…
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Currently, [CARDTargetOntologyProvider](https://github.com/rcsb/py-rcsb_utils_targets/blob/master/rcsb/utils/targets/CARDTargetOntologyProvider.py) assumes it's rebuilt from scratch every time. It nee…
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As pdbML is also an option given by rcsb.org it would be really neat if pdbtbx can also support this format. One caveat however is that #99 should be fixed first as all files are only given in zipped …
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I am using these structures
https://www.rcsb.org/structure/6D9H
https://www.rcsb.org/structure/5N2S
And both of them contain bound things. 6D9H has a bound G - Protein, while 5N2S has a cytochr…
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In several places in `PDBList.py`, we try to build links to the databases expecting a url path of the form `/pub/pdb/...` (e.g. [here](https://github.com/JoaoRodrigues/biopython/blob/4d7042ed118550569…