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In https://github.com/greenelab/hetmech/pull/173, I began touching up some of the rephetio epilepsy predictions for the manuscript. Specifically, I'm most interested in including visualizations from:
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Currently we have a few mentions of related works in the [introduction other works section](https://greenelab.github.io/connectivity-search-manuscript/v/a8e6b35298c4011dc06ae73fe6268ff97c89d3d0/#todo-…
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We had a hetmech conference call today with @bdsullivan @cgreene @zietzm @kkloste and Drew van der Poel. @bdsullivan brought up the possibilities of using other methods than XSwap to create permuted h…
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I'm reviewing the following OpenBioLinks manuscript for the journal _Bioinformatics_:
> **OpenBioLink: A resource and benchmarking framework for large-scale biomedical link prediction**
Anna Bre…
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Looking at the [supplemental tables](https://github.com/OpenBioLink/OpenBioLink/blob/66975836859b6a3b6dc061e2003db53829d438e2/paper/supplementary%20data.pdf), I see the study has incorporated data fro…
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Hello from the use case over at [COVID-19 Review](https://github.com/greenelab/covid19-review)!
We're running into an issue where we need to cite [clinical trial identifiers](https://blogs.uoregon.…
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The latest version of the manubot rootstock has a few theme improvements that should be integrated into this manuscript. Namely, the social media `.svg` icons in the authors section now have defined w…
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https://het.io/repurpose/metapaths.html
In the table above, metapaths that contain 'G
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I'm looking at files at http://het.io/disease-genes/downloads/ and am wondering if there's a key to the headers of the different input files? For example, https://raw.githubusercontent.com/dhimmel/het…
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@dhimmel @agitter @slochower Please suggest some manuscripts that we can include in the "Made With Manubot" section. In this issue I'd like to come up with an in-order list of 5 to 10 manuscripts to f…