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I want to know if we can use
1. Trimgalore instead of tRIMMOMATIC
2. MEGAHIT INSTEAD OF IDBA
3. And then Prodial
Will the program work on a PC to do the work?
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First, thanks for a great tool and a great resource.
We are annotating already inferred protein sequences from metagenome-assembled genomes. I notice that, [at least in 2021](https://github.com/ar…
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https://mp.weixin.qq.com/s/0ZH3U7eP7EWHZOnFpvCesw
ixxmu updated
6 months ago
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I'm looking for clarification on the resistome analyzer portion of the pipeline. I'd like to know how mismatches in the alignment are handled in relation to the coverage threshold set by the user and …
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Using the latest version of AMRplusplus (v3.0.2) and running this command for testing I get the following SNP errors:
```
nextflow run main_AMR++.nf -profile singularity --snp Y
```
Error
```
…
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Hi,
I have recently executed card bwt for a set of metagenomic reads that I have and I would like to summarize my results in one table so I can compare my samples.
I was wondering if you have …
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Use CARD db to find antibiotic resistance genes for ARGOS orgs
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Hi,
I've managed to install the AMR++ env via conda, following the instructions. It works when I run the demo pipeline, but when I try to run my samples (in different pipelines - fast_AMR, resistom…
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Hello There,
I have two questions to ask:
a. I am working with wastewater samples data and want to see presence of ARG in the metagenome samples. Which method I shall use either RGI main or RGI bw…
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Hi,
I am testing the AMR++ with heavier data but I fails due to an error on trimmomatic. The output of trimmomatic.stats.log is below. It seems that it did not find any clipping sequence and ends.…