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1. As a next step for this project, Marc should try to retrain the MXfold2 PyTorch models to see if the retrained model can reproduce the performance using the same neural network architecture and par…
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Hi there
I'm recently developing [MultiMolecule](multimolecule.danling.org), and we have included many pre-trained foundation models in our hub.
I believe RibonanzaNet can be an excellent addit…
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Hi:
Thank you very much for your data. The RNA tertiary structure of SARS-COV-2 is indeed an interesting topic, and the operation of FARFAR2 is really time-consuming. I'm a little confused about the…
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I have tested e2efold on a set of 361 PDB chains, where secondary structures for RNAs shorter than 600 nucleotides are predicted by ``e2efold_productive/e2efold_productive_short.py``, while those lon…
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Using the following code produces an error with an NSD file (Structure Editor) that is made from a ct file that contains >1 structures. However, once I manually removed all of other structures from th…
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Dear github authors:
recently I read your paper entitled"A novel end‑to‑end method to predict RNA secondary structure profile based on bidirectional LSTM and residual neural network",and it is a p…
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Today I focused on two different areas; using bacteria and diagnostic tools and different components of genetic circuits. I already knew about the paper based circuit design but figured id include it …
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An interesting point was raised by Aya: how can we be sure the plasmid contained in the mother cell will be transferred to the minicell?
It was then suggested that we look at the iGEM Vilnius-Lithu…
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Hi,
I'm reaching out with a question related to the applicability of your models for tasks with a smaller dataset. Specifically, I'm interested in whether there are available scripts for fine-tuning…
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I haven't been able to locate the dataset which you said was available on Mathews Lab. Please send the link.