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Hello!
I'm trying to run a bulk RNA-seq analysis using the following template:
```
# Template for human RNA-seq using Illumina prepared samples
---
details:
- analysis: RNA-seq
genome…
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Hello. Thank you for this package. I'm doing an integration analysis using more than 40 scATAC samples. However, I do not have scRNA data from the same cells. I tried doing the label transfer using th…
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- [x] Remove all donwstream analyses e.g., DeSeq & PCA
- [x] change script [[count-matrix.py](http://count-matrix.py/)](http://count-matrix.py/) line 40 sep="\t" to sep = ","
- [x] switch to one s…
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Hi everyone. Great work for the new paper. I'm trying to replicate the results in your joint ATAC-seq and RNA-seq paper. I saw that for the analysis of A549 ATAC-seq, you mention that the procedure wa…
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Kindly comment on this issue why you are interested in this mini-project
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Hi,
I wanted gene ontology analysis for marchantia genome RNA Seq data can I use this script for my analysis as blast2go is paid is there any issues will be there please help me.
Thank you
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Dear Author,
I hope this message finds you well. I have been working with the BayesPrism package for bulk RNA-seq deconvolution, and I have a few questions that I was hoping you might clarify.
O…
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Hi!
I have rRNA depleted total RNA-Seq reads obtained using below kits. Can I use these to identify all AS events? (I am getting SEs and MXEs and no other as events using rMATS.) Is there any speci…
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I'm currently working on setting up a simple RNA-seq analysis pipeline using snakemake, and I've integrated the STAR wrapper from snakemake-wrappers. However, I've run into an issue where specifying `…