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https://mp.weixin.qq.com/s/u7zsn7d1Ls2OxeGZfYsjCg
ixxmu updated
2 years ago
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Dear,
Thera always are some batch effects among different single cell experiments. We need to remove batch effects with some tools like COMBAT, MNN, CCA and so on. Is scvelo robust to batch effects o…
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Hello everyone,
I'm just getting started at scVelo and I struggled a lot to put together the input data that combines splicing info from the loom file obtained by `velocyto` and extra informatio…
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Hello!
I am working in the velocity analysis and I am wondering wether I should trust my results or not. My dataset is composed of cells involved in zebrafish hematopoiesis at 26hpf. The overall di…
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Hi, thank you for the wonderful package.
I was wondering what are the best practices / advice when analysing a set of samples with different cell types.
1. Do you expect serious complications if…
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I'm plotting a directed PAGA on basis diffmap using `scv.pl.paga(adata, basis='diffmap', color='clusters_coarse')`. This gives me:
![image](https://user-images.githubusercontent.com/24494650/86599216…
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I recently added a MNN-based MST to **TSCAN** and I wonder whether the code would be of interest here.
http://bioconductor.org/books/release/OSCA/trajectory-analysis.html#tweaking-the-mst
http://b…
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Hello! I have a dataset for which I have already performed clustering using UMAP (Seurat). I want to use the same coordinates and compute velocity. For some reason "velocity.R" keeps failing. Is it po…
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As one can see for the following Item, Senior Theses Items imported from submissions for certificate programs are members of multiple collections, one being the departmental collection, the other bein…
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Hello there Pigx team!
I'm a junior bioinformatician in charge of our research group analysis and I'd like to test Pigx for analyzing some Fastq files for RNA velocity estimation (I was originally…