-
I applied your script on my data. As you can see in the metadata I have a column called traitment with ( CTRL , TR1 ,TR2 and TR4)
ko_abundance_file
-
This should be possible with the r2dt-web web component :
- https://github.com/RNAcentral/r2dt
- https://github.com/RNAcentral/r2dt-web
- https://r2dt.readthedocs.io/en/latest/widget.html
-
Hello,
I get this error when I try to run metaerg
unning: diamond blastp -k 1 --quiet -k 1 --masking 1 -p 8 -q metaerg.pl_10162019/tmp/cds.faa -d /hpc-home/ravia/tools/metaerg/db/diamond/uniprot_…
-
It seems like the NCBI doesn't like hypothetical proteins with EC numbers anymore.
They are unhappy with such annotations and are asking for the EC# to be removed.
`ArME14_ctg_01 funannotate mRNA …
-
Hello,
is there a way to know which is the percentage of complete sequences among from the ORFs/proteins predicted by Funannotate?
Thanks.
-
Hello
I want to use this analysis for drosophila. I'm guessing I could just align my reads to drosophila rRNA if I provide the fasta files, but from there would I be able to go any further?
Tha…
-
Dear @AntonPetrov et al,
I am trying to use R2DT to visualize secondary structures of non-coding internal transcribed spacer 2 (ITS2) sequences in a standard layout for evolutionary/phylogenetic an…
-
**Describe the bug:**
binning-prokaryote fails at 7__dastools step. dastools appears to run/start but fails after calculating contig lengths.......
**Versions**
veba_binning-prokaryotic_1.4.1.s…
-
Hi,
I am kind of new. I installed cat on slurm as per github instructions and added all dependencies either through anaconda or manually installed and provided the path.
The code I used for test r…
-
Thanks for this nice tool. I'm running into an issue trying to validate embl files that were generated on your tool. I'm using webin-cli-1.7.1 and it throws up the below error when I try to validate/s…