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Hi,
First of all thanks for developing this package (hope to use it soon!). I have been trying to familiarize myself with the package, and while trying to run the 'introduction' code from the bioco…
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List of needed features and modifications
- [x] Personal database implementation
https://github.com/ImagoXV/NanoASV/commit/a48298e33ebc8c7b62db2f117e6a6d5e207543f7 - Personal database OK. Ind…
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I want minimap2 + samtools integrated into dnadesign so that alignment can take place without going to C / bash.
https://biowasm.com/cdn/v3/minimap2/2.22
It can definitely be done, just will tak…
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Hi, I got the same error for samtools while running configure as shown below:
Command used - ./configure --with-samtools=./src/include/samtools-legacy_0.1.19_debian
Error:
checking for sam_open…
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* link to support ticket: [#2024102360000352](https://otrsdict.ugent.be/otrs/index.pl?Action=AgentTicketZoom;TicketID=173761)
* website: https://github.com/Trinotate/Trinotate/wiki
* installation do…
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I was running midas as a module,
module load midas /1.3.2
I encountered this error
Error: could not execute samtools binary: samtools
(exited with error code 127)
To solve this issue, follow the…
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### Description of the bug
Hello,
I am having trouble with the sample input file. I have .csv file with correct file names and format as described in the pipeline page (also attached here). I get …
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It might be worthwhile to add samtools to the installation requirements list. I used the suggested command:
```
conda install numpy scipy cython numba matplotlib scikit-learn h5py click
```
Then I…
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It seems like there is currently no support for possible correction/avoiding double counting of coverage overlap in paired-end read-pairs (samtools depth option -s) and deciding on whether to include …
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Hi tseemann,
I am use snippy 4.6.0, and I am wondering why samtools excluded most of the reads. In the end, I got no variant (I am expecting variant), and when I calculate the read depth per posit…