shendurelab LACHESIS issues

shendurelab / LACHESIS

The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)

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issues

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ERROR: Couldn't find any ordering files ('group*.ordering') in out/test_case/main_results/. Is this the right directory? Was Lachesis successfully run?

#69 Eric-anyu opened 1 year ago
0
checking for sam_open in -lbam... no

#68 fire-activate opened 2 years ago
0
compile fail int64_t declaration without type.

#67 molikd opened 3 years ago
1
samtools error

#66 anupullanhi opened 3 years ago
1
Lachesis: GenomeLinkMatrix.cc:1133: void GenomeLinkMatrix::ValidateClusters(const TrueMapping*, bool) const: Assertion `( same_cluster ? N_links_same_cluster : N_links_diff_cluster )

#65 pengbo233 opened 3 years ago
1
void LoadDeNovoCLMsFromSAM

#64 linshengnan2020 opened 4 years ago
0
Error in force(filename) : object 'jpeg.file' not found

#63 baishengjun opened 4 years ago
0
Error for ordering step

#62 clementmo opened 4 years ago
0
significant clusters but no contigs oriented

#61 jazberna1 closed 5 years ago
0
cluster number is not equal with what I know

#60 forrwill opened 5 years ago
0
configuration ERROR with samtools

#59 WTarabidopsis opened 5 years ago
3
samtools-0.1.18 boost_1_52_0

#58 liyang16859 opened 5 years ago
1
checking for library containing deflate... no

#57 sr-c opened 5 years ago
1
errors about SAMStepper.cc and SAMStepper.h in sam.h

#56 GitHub-Lujianjun opened 5 years ago
0
Error in grid.newpage() : could not open file 'out/HiC_heatmap.jpg'

#55 hzaumsq closed 5 years ago
1
bam/sam.h

#54 simonkidd opened 5 years ago
7
How to get chromosome bins

#53 mictadlo opened 5 years ago
6
Segmentation fault (core dumped) using reference

#52 xinwang-bio closed 5 years ago
2
error: Assertion `c1.pos == c2.mpos' failed

#51 hzaumsq opened 6 years ago
4
error

#50 hzaumsq closed 6 years ago
0
link to new, recommended DOI resolver in README.md

#49 SimonWaldherr opened 6 years ago
0
Bareword found where operator expected at PreprocessSAMs.pl

#48 mictadlo opened 6 years ago
1
./configure checking samtools... failed

#47 winni-liu closed 4 years ago
3
CreateScaffoldedFasta.pl error

#46 bhagya-ct opened 6 years ago
2
BugFix in make_bed_around_RE_site.pl

#45 FlyPythons opened 6 years ago
1
An configure error about boost

#44 wangzhennan14 opened 6 years ago
3
Boost lib connect error? any one have solve it?

#43 milkcookie opened 6 years ago
0
Lachesis: Lachesis.cc:158: void LachesisOrdering(const RunParams&): Assertion `(int) clusters.size() >= run_params._cluster_N' failed.

#42 rahmanYI opened 6 years ago
3
link to new, recommended resolver

#41 katrinleinweber closed 6 years ago
0
cleanup build artefacts, fix build scripts

#40 ebirn closed 6 years ago
0
LIBEVENT_CHECK_CONFIG

#39 jayshankarcnair opened 7 years ago
1
No link data

#38 SergejN opened 7 years ago
2
when donging 'make', it appeared 'collect2: ld returned 1 exit status'

#37 maolingfengZJU opened 7 years ago
5
Incorrect Reverse Complementation

#36 malonge opened 7 years ago
0
./configure: line 16192: syntax error near unexpected token `BOOST_REQUIRE'

#35 SchwarzEM opened 7 years ago
6
unique mapping

#34 tangerzhang opened 7 years ago
0
blastalignment

#33 ivyhzau closed 7 years ago
0
version number?

#32 cooketho opened 7 years ago
0
configure: error: cannot run /bin/sh ./config.sub

#31 fidelram opened 7 years ago
3
Configure error.

#30 wyim-pgl opened 7 years ago
3
Gaps

#29 ivyhzau closed 7 years ago
0
build failure

#28 linsson opened 7 years ago
3
cleaned up my autotools mess, now it should properly compile without …

#27 abelew closed 7 years ago
0
2 changes: autoconf and whitespace

#26 abelew closed 7 years ago
0
potential pull request

#25 abelew opened 7 years ago
3
null_score != 0

#24 ivyhzau closed 7 years ago
2
Testing out Lachesis on a sample dataset: error while loading shared libraries: libboost_system.so.1.62.0

#23 rcosentino closed 7 years ago
1
get a very big clusters

#22 liufuyan2016 closed 7 years ago
3
ChromLinkMatrix

#21 fmarletaz opened 8 years ago
3
GenomeLinkMatrix error

#20 okokookk opened 8 years ago
7