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transferred from: https://github.com/sars-cov-2-variants/lineage-proposals/issues/1653
tree: https://nextstr…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1919
KP.3.3+G18274T(Orf1b:A1603S)+del29581(Orf10 frameshift)+T21738C(S:F59S)
GISAID query: G18274T,T21738C,G28884C
No. of se…
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S:T572I is the top mutation predicted by the mutation GPT on XEC backbone, and there are really multiple S:T572I lineages emerging.
From https://github.com/sars-cov-2-variants/lineage-proposals/iss…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1867
KP.3.1.1+A25121C(S:N1187H)
GISAID query: A25121C, C12616T, A13121T
GISAID query for S:S46L branch: C21699T,C4551T (By @Fe…
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We need to annotate manually-curated molecules with the following information:
- Target: mPro, Spike, ...
- Phenotypic Assay: 0 or 1
- Target Assay: 0 or 1
- Docking: 0 or 1
- IC50: value in uM…
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From branch 31 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1771
This S:R190S becomes convergent in KP.3.1.1, too.
KP.3.1.1+G22132T(S:R190S)
GISAID query: C12616T,A13121T,…
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Dear author,
Thanks for sharing your wonderful code! Recently when I try to reproduce the ligand generation mentioned in paper for SARS-CoV-2 main protease, I encountered error `OverflowError: can'…
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Previously tracked as Branch 23 in https://github.com/sars-cov-2-variants/lineage-proposals/issues/1771
LB.1.3.1 >> S:C1243F (G25290T)>C24382T, S:R190S (G22132T)
Query: G22132T, C24382T, G25290, …
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There seems to be a very new and very interesting branch of XEC found by @FedeGueli 。
From branch 13 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/2088
XEC+G2060A(Orf1a:A599T)+ …
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After finishing the SARS-CoV-2 support in #549, do more extensive testing with published sample data. List of samples to [download] and the [toolkit] to download with.
Find more samples from [SRA] …