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A few points on the sbml file structure:
Line 2 needs to contain the following:
```
```
The document should also end with ``` ``` on the last line as a closing statement for the line above.
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I'm just wondering if there are any plans for implementing an SBML export capability? For example, when something is changed a model (e.g. one of the equations), it would be great to be able to export…
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support events in sbmle export
dlill updated
3 years ago
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Currently PySCeS imports/exports L2V4 and we need to deal with the model syntax (no defaults etc) as well as new/changes elements (event handling, math, packages, annotation).
bgoli updated
7 months ago
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I am using SBML validation a lot. Often it is difficult to figure out what object creates the error in larger models. It would be very helpful to provide the `sid` and perhaps also the name `name` att…
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Hi all,
I just read the LASSIE paper and wanted to compare the results to libroadrunner I was involved with
See:
https://www.ncbi.nlm.nih.gov/pubmed/26085503
which achieves in my own experience ~5…
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I used http://sbml.org/Facilities/Validator/ to validate a few of the models after cobrapy said that they were invalid and the validator said that there were two issues:
SBML Validation Rule #10713…
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This is a spin of from #6 for Confidence Scores.
Suggested: An additional (fbc or SBML) field "confidenceScore" associated with all model parts to indicate certainty of a specific model part.
tpfau updated
6 years ago
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I'm looking for API that was hosted under this url: http://sbml.org/validator/ (currently, 404 page not found)
I found the web version here: https://sbml.org/validator_servlet/, but link to network…
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Hi,
I have been working with m2m to do some microbial community metabolic interaction analysis and I have stumble with and issue. When trying to run the mincom minimal_community.mincom() function o…