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We're adding measurements as annotations in a somewhat arbitrary namespace right now. We need to make sure that they're actually matching what's written in the SBOL 2.3 specification, and can be read …
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Current Status of Excel-Utilities and overall Excel-to-SBOL update (12/07/23):
- simple_library.xlsx has been successfully replicated to the standard of SBOL_utilities.
- Post-processing tool capable…
wdrav updated
6 months ago
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Add a function that flattens out hierarchy in an SBOL file. This should eliminate all Modules and Components in a design.
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Currently, Eugene supports SBOL-v.1.0. We need to upgrade it to SBOL-v.2.0.
- [x] import libSBOLj 2.0 library
- [ ] pass valid SBOL Document to SynBioHub
- [ ] ensure proper conversion from Eugen…
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This SEP codifies expectations about how to propose and implement changes in SBOL Visual.
https://github.com/SynBioDex/SBOL-visual/blob/master/SEPs/SEP_V023.md
At the moment, it lays out the rat…
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The SBOL data model includes parent-child compositional relationships that cannot be expressed using ordinary OWL. For this reason we have introduced a specialized property type in https://github.com…
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When the "data sources" tab is missing a column (e.g., column G on old versions of the sheet), it exceptions with an opaque error:
```
>>> doc = es.excel_to_sbol(wb)
Traceback (most recent call las…
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While testing some things with GenericTopLevels I found that this file validates:
```
Camembert is a moist, soft, creamy, surface-ripened cow's milk cheese. It was first made in the la…