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Hello,
I'm running this workflow:
```golang
param (
// S3 path to 10x folder
tenx string
// Full s3 file location to put the sourmash signature
output string
//…
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Extending https://github.com/sourmash-bio/sourmash/issues/1750, I am copying a conversation between @ctb and @drtamermansour to be detailed later into tasks.
Slack Conversation
Tamer Mansour…
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see twitter thread https://twitter.com/amanjeev/status/1287422176711389184
Edit: we should also put "repeatable quests" in the issue tracker, e.g.
* update some few tests to use `@utils.in_tempdir…
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Hello,
If I wanted to do exact k-mer comparisons between genome assemblies could I simple use `sourmash sketch` with `scaled=1`?
Is this a stupid thing to do?
I have a limited set of bacterial…
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This is an update of and replacement for https://github.com/dib-lab/sourmash/issues/999, which raised a lot of issues around how we were doing protein k-mer calculations.
This issue is being update…
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I was wondering if it was worth looking at within signature differences to get an idea of the diversity of hashes? i.e using Jaccard, Hammings or Lenvestein metrics.
I need to check my understanding…
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Dear sourmash team,
I've recently attempted to create a minimal test dataset and encountered an error when using `sourmash gather`.
Specifically, it raises an `AssertionError`.
I think that t…
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Use tools from spacegraphcats to do the indexing https://github.com/spacegraphcats/spacegraphcats/issues/273
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not sure this is the right place to ask, but: is there a ball park estimate of how many reads/ bases are at least required to reliably identify an isolate of some bacterium? in terms of coverage, 1x s…
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despite https://github.com/dib-lab/sourmash/issues/1571, the problems in #1552 continued after using the new `remove_many` implementation until I refactored the enclosing script in #1613.
The follo…