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### Description of the issue:
Validation of specifications-compliant unmapped records raises validation failures.
The SAM specifications state:
• Bit 0x4 is the only reliable place to tell whethe…
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This issue is meant to capture the meeting notes and conversation that will take place 9am PT and 12pm ET, July 12, 2018.
https://meet.google.com/qce-kmjd-ugc
Here is a draft agenda, please add …
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I am trying to the docker image on a cloud-based platform to run the pipeline but am running into problems because I am not running an interactive environment where I can create directories. Even the …
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There has been a small amount of discussion about the BD Rhapsody barcode / sequence format (e.g. see [here](https://github.com/COMBINE-lab/salmon/issues/445#issuecomment-551083490)), but it would be …
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## Expected Behavior
When an output of type `File` is defined in a `CommandLineTool`, it should be located directly in the specified `--outdir` even if it is also part of another output of type `Dire…
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**Is your feature request related to a problem? Please describe.**
From issue #3616 we could take advantage of the `sbg:fileTypes` extension and use the information filled there in the input and outp…
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Hello everyone, especially hg38 reference genome users!
Now bcbio has hg38 support for almost 5 years!
http://bcb.io/2015/09/17/hg38-validation/
However, many user were still on GRCh37/hg19, be…
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Hello,
I have been mapping Rhapsody WTA libraries using STARsolo with great success using the suggestions [here](https://github.com/alexdobin/STAR/issues/1111#issuecomment-1059029529) however, BD jus…
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Hi folks:
When i download files via API, the download completes, but file size is different than when I download via browser. Consequently, API-downloaded files wouldn't open with gzip or viewers..…
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- Shared flyers with our collaborators: FDA, Nextflow, SevenBridges, and DNAnexus.
- Event details have been shared with the Biochemistry department
- Emailed previous attendees from past BioCompute …