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I'm not fully clear what's happening here, but I noticed a strange behavior where submitting a model with `--overwrite` _while that same model is currently running_ while cause `bbi` to error out _som…
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Currently, C-PAC generates SGE job files that presuppose the existence of a parallel environment named 'cpac' on the cluster. Users might use a parallel environment with a different name, and we shou…
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It would be good to use community standards rather than home-brew things.
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### Is there an existing issue for this?
- [ ] I have searched the existing issues
### New feature
- Somewhat related to #227
- Add a flag to `nipoppy run` (and `nipoppy bidsify`) which will make i…
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Hi.
I have two questions:
Question 1:
```
t = t - t.mean(dim=1, keepdim=True)
std = t.std(dim=1, keepdim=True) + 1e-5
t = t / std
t = t.view(b, self.groups, h,…
mrT23 updated
2 months ago
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Khalid mentioned that we need to incorporate SGE testing into Centaur soon and some thoughts that came up from today's tech talk:
- There's a docker image with SGE on it, and we can use that through C…
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Criar uma documentação (slides) para treinamento sobre a os sistemas SGE/Site da Fábrica.
- Fazer atividade para que os novos integrantes possam replicar o conceito nos computadores da fábrica;
Tópi…
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Hello,
I am trying to run YAMP on a cluster of type SGE. It put these information in "process" part of the nextflow.config file :
executor = 'sge'
queue = 'batch,batchbm'
I get the followin…
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I ran a small number of subjects (6) on an sge cluster config in bpipe, I also have concurrency requirements set in the local pipeline (uses threads).
The pipeline did not run the stage complaining:
…
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Hi,
I am trying to run the software but I'm encountering an issue with the amount of RAM it uses. I'm not using SGE because I want to run the software directly on a server with 80 cores and 512 GB …